RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 C21orf59P57076 290 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 PFN3P60673 137 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 IRF9Q00978 393 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 IL9RQ01113 521 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 DMWDQ09019 674 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 ASPHQ12797 758 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 OVGP1Q12889 678 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 TEAD4Q15561 434 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 PLA2G4EQ3MJ16 856 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 TUBB8Q3ZCM7 444 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 LYSMD4Q5XG99 296 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 ARMCX6Q7L4S7 300 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 RD3Q7Z3Z2 195 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 ABI3BPQ7Z7G0 1075 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 CFAP206Q8IYR0 622 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 TMEM145Q8NBT3 493 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 PPP1R14CQ8TAE6 165 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 STAG3L4Q8TBR4 150 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 NAT14Q8WUY8 206 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 NXNL1Q96CM4 212 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 CCDC97Q96F63 343 aaPredicted RBP13.96□□□□□ -0.17
SKA1-202ENST00000398452 BMFQ96LC9 184 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 LINC00615Q96LM1 132 aaPredicted RBP13.96□□□□□ -0.17
SKA1-202ENST00000398452 SLC6A18Q96N87 628 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 FAM111AQ96PZ2 611 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 MRPL57Q9BQC6 102 aaKnown RBP13.96□□□□□ -0.17
SKA1-202ENST00000398452 TRIM54Q9BYV2 358 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 DERL2Q9GZP9 239 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 CARS2Q9HA77 564 aaKnown RBP13.96□□□□□ -0.17
SKA1-202ENST00000398452 CYP4F12Q9HCS2 524 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 SUSD2Q9UGT4 822 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 SLC17A4Q9Y2C5 497 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 CA5BQ9Y2D0 317 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 PLLPQ9Y342 182 aa13.96□□□□□ -0.17
SKA1-202ENST00000398452 OTOGLQ3ZCN5 2332 aa13.96□□□□□ -0.18
SKA1-202ENST00000398452 NUMA1Q14980 2115 aa13.96□□□□□ -0.18
SKA1-202ENST00000398452 CCDC189A1A4V9 331 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 SYCE1LA8MT33 242 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 H0Y8X5 98 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 BTN3A1O00481 513 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 CHUKO15111 745 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 SMIM24O75264 130 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 TNFP01375 233 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 S100BP04271 92 aaPredicted RBP13.95□□□□□ -0.18
SKA1-202ENST00000398452 CHN1P15882 459 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 TFEBP19484 476 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 BCKDHBP21953 392 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 AOAHP28039 575 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 CCR7P32248 378 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 DPP6P42658 865 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 ID4P47928 161 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 IRX4P78413 519 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 ARHGAP8P85298 464 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 PPARDQ03181 441 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 ZNF528Q3MIS6 628 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 LVRNQ6Q4G3 990 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 SH2D5Q6ZV89 423 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 CHST15Q7LFX5 561 aaPredicted RBP13.95□□□□□ -0.18
SKA1-202ENST00000398452 ADAMTSL2Q86TH1 951 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 IQCHQ86VS3 1027 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 TRIM42Q8IWZ5 723 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 MFSD2AQ8NA29 543 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 ARMC2Q8NEN0 867 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 OR2L2Q8NH16 312 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 LKAAEAR1Q8TD35 194 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 GLMNQ92990 594 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 OR2M4Q96R27 311 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 MRPL46Q9H2W6 279 aaKnown RBP13.95□□□□□ -0.18
SKA1-202ENST00000398452 TFB2MQ9H5Q4 396 aaKnown RBP13.95□□□□□ -0.18
SKA1-202ENST00000398452 ZSCAN32Q9NX65 697 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 FAM53CQ9NYF3 392 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 TSR3Q9UJK0 312 aaKnown RBP13.95□□□□□ -0.18
SKA1-202ENST00000398452 LRRK1Q38SD2 2015 aa13.95□□□□□ -0.18
SKA1-202ENST00000398452 SDK1Q7Z5N4 2213 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 PRSS38A1L453 326 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 TMEM202A6NGA9 273 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 H3BM21 787 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 IFRD1O00458 451 aaPredicted RBP13.94□□□□□ -0.18
SKA1-202ENST00000398452 RASGRP1O95267 797 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 CEACAM5P06731 702 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 HIST1H2AGP0C0S8 130 aaPredicted RBP13.94□□□□□ -0.18
SKA1-202ENST00000398452 MPC1LP0DKB6 136 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 MYL2P10916 166 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 ACP5P13686 325 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 CTSEP14091 401 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 CD1DP15813 335 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 HIST1H2ADP20671 130 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 MAP4P27816 1152 aaKnown RBP13.94□□□□□ -0.18
SKA1-202ENST00000398452 PGGT1BP53609 377 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 SRP54P61011 504 aaKnown RBP13.94□□□□□ -0.18
SKA1-202ENST00000398452 LPAL2Q16609 132 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 C16orf46Q6P387 395 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 TTC23LQ6PF05 361 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 NEK10Q6ZWH5 1172 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 RAB44Q7Z6P3 723 aaPredicted RBP13.94□□□□□ -0.18
SKA1-202ENST00000398452 CLEC14AQ86T13 490 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 HID1Q8IV36 788 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 FANCMQ8IYD8 2048 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 SPATA6LQ8N4H0 392 aa13.94□□□□□ -0.18
SKA1-202ENST00000398452 OR13H1Q8NG92 308 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms