RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 SHC3Q92529 594 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 GBA2Q9HCG7 927 aaPredicted RBP13.81□□□□□ -0.2
COL4A3-202ENST00000396578 ATPIF1Q9UII2 106 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 SH3D21A4FU49 640 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 RCCD1A6NED2 376 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 ZNF823P16415 610 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 MED27Q6P2C8 311 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 STRADAQ7RTN6 431 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 KIAA0319LQ8IZA0 1049 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 ANKFN1Q8N957 763 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 PCDHGC3Q9UN70 934 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 FAM149AA5PLN7 773 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 SLC33A1O00400 549 aaPredicted RBP13.81□□□□□ -0.2
COL4A3-202ENST00000396578 TOR1BO14657 336 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 TPST2O60704 377 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 CACNG1Q06432 222 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 TEX44Q53QW1 395 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 ARL13AQ5H913 290 aaPredicted RBP13.81□□□□□ -0.2
COL4A3-202ENST00000396578 PHC3Q8NDX5 983 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 HIST1H2AAQ96QV6 131 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 EBF3Q9H4W6 596 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 MOCS1Q9NZB8 636 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 CFL2Q9Y281 166 aa13.81□□□□□ -0.2
COL4A3-202ENST00000396578 LGR5O75473 907 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 KELP23276 732 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 IL12BP29460 328 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 GRK6P43250 576 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 RTP1P59025 263 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 MRPS6P82932 125 aaKnown RBP13.8□□□□□ -0.2
COL4A3-202ENST00000396578 PDCD4Q53EL6 469 aaKnown RBP13.8□□□□□ -0.2
COL4A3-202ENST00000396578 OR4K2Q8NGD2 314 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 C15orf40Q8WUR7 153 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 XKR8Q9H6D3 395 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 GADD45GO95257 159 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 UGT2B4P06133 528 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 ZNF3P17036 446 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 LCP2Q13094 533 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 SLC1A5Q15758 541 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 WSCD2Q2TBF2 565 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 ADGRD1Q6QNK2 874 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 ERI1Q8IV48 349 aaKnown RBP13.8□□□□□ -0.2
COL4A3-202ENST00000396578 FTHL17Q9BXU8 183 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 LHX5Q9H2C1 402 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 GLOD4Q9HC38 313 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 RGS17Q9UGC6 210 aaPredicted RBP13.8□□□□□ -0.2
COL4A3-202ENST00000396578 MRPS23Q9Y3D9 190 aaKnown RBP13.8□□□□□ -0.2
COL4A3-202ENST00000396578 TIMM22Q9Y584 194 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 POU2F1P14859 743 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 IQCCQ4KMZ1 466 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 SH3RF1Q7Z6J0 888 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 GPR135Q8IZ08 494 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 KCTD7Q96MP8 289 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 B3GNT4Q9C0J1 378 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 KCNMB3Q9NPA1 279 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 MALT1Q9UDY8 824 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 NOBOXO60393 691 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 SNAPC5O75971 98 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 MAPK14Q16539 360 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 PRR23CQ6ZRP0 262 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 ZNF558Q96NG5 402 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 OR51V1Q9H2C8 321 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 COQ10BQ9H8M1 238 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 CXCR6O00574 342 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 CLDN4O14493 209 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 CXCL11O14625 94 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 PRAMEF12O95522 483 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 PTPN9P43378 593 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 IDH3AP50213 366 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 CD83Q01151 205 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 CLCQ05315 142 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 HSPB3Q12988 150 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 ADAM15Q13444 863 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 TRIM74Q86UV6 250 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 TRIM73Q86UV7 250 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 FCRL2Q96LA5 508 aaPredicted RBP13.8□□□□□ -0.2
COL4A3-202ENST00000396578 TRPV4Q9HBA0 871 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 PCDH18Q9HCL0 1135 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 COPS7AQ9UBW8 275 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 SPATA31A1Q5TZJ5 1347 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 YDJCA8MPS7 323 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 SCAMP3O14828 347 aaKnown RBP13.8□□□□□ -0.2
COL4A3-202ENST00000396578 RAP2AP10114 183 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 HEPACAMQ14CZ8 416 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 RHEBQ15382 184 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 TBC1D25Q3MII6 688 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 ZNF627Q7L945 461 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 KCNK18Q7Z418 384 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 ANKRD46Q86W74 232 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 COQ8BQ96D53 544 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 C8orf48Q96LL4 319 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 CD320Q9NPF0 282 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 SLC22A2O15244 555 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 PDPK1O15530 556 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 TLR5O60602 858 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 CNTN2Q02246 1040 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 IRF2BP2Q7Z5L9 587 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 GHDCQ8N2G8 530 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 GLIS3Q8NEA6 775 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 TNFRSF25Q93038 417 aa13.8□□□□□ -0.2
COL4A3-202ENST00000396578 TREM1Q9NP99 234 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms