RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 OLFM1Q99784 485 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 OR2AG1Q9H205 316 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 GAREM1Q9H706 876 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 IL21RQ9HBE5 538 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 ZNF624Q9P2J8 865 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-202ENST00000394943 POLG2Q9UHN1 485 aa6.87□□□□□ -1.31
LIMA1-202ENST00000394943 RALGAPA1Q6GYQ0 2036 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 A0A087X1B8 175 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 GPR39O43194 453 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 TNFSF14O43557 240 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 RFPL1O75677 317 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ERVK-10P10266 1014 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 CEACAM1P13688 526 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 GLB1P16278 677 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ZNF37AP17032 561 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 HSD17B2P37059 387 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 GTF2H3Q13889 308 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ERCC6LQ2NKX8 1250 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 HECTD2Q5U5R9 776 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ZNF470Q6ECI4 717 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 TMEM220Q6QAJ8 160 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 PRSS42Q7Z5A4 293 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 AMZ2Q86W34 360 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 CDKL2Q92772 493 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 KLK6Q92876 244 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 WDR34Q96EX3 536 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ZNF285Q96NJ3 590 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 SLC12A9Q9BXP2 914 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 TMEM168Q9H0V1 697 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 SLC40A1Q9NP59 571 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 TM7SF3Q9NS93 570 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 RXFP3Q9NSD7 469 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 IARS2Q9NSE4 1012 aaKnown RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 IGSF5Q9NSI5 407 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 PIH1D1Q9NWS0 290 aaKnown RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 PIKFYVEQ9Y2I7 2098 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ATXN2Q99700 1313 aaKnown RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 USP34Q70CQ2 3546 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 SERTM1A2A2V5 107 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 POP7O75817 140 aaKnown RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 CDK14O94921 469 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 MPOP05164 745 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 VCLP18206 1134 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 SPRP35270 261 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 MPP1Q00013 466 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ZFP36L1Q07352 338 aaKnown RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 SEPT6Q14141 434 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 RPE65Q16518 533 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 HSP90AA5PQ58FG0 334 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ZRANB3Q5FWF4 1079 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 STPG1Q5TH74 334 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 MICALCLQ6ZW33 695 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ZBTB2Q8N680 514 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 UBXN4Q92575 508 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 PGM2Q96G03 612 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 EDEM2Q9BV94 578 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 SLC13A1Q9BZW2 595 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 UCKL1Q9NWZ5 548 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 SCHIP1Q9P0W5 487 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 TBC1D29Q9UFV1 150 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 VWA7Q9Y334 891 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 NUP210LQ5VU65 1888 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 NEMP2A6NFY4 417 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 GOLGA8CPA6NN73 597 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 H3BMH7 237 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 TRIM38O00635 465 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ATP8B1O43520 1251 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ALDOAP04075 364 aaKnown RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 CAPNS1P04632 268 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 PKLRP30613 574 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 MLLT3P42568 568 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 THOP1P52888 689 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 THOC5Q13769 683 aaKnown RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 CLCA4Q14CN2 919 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ALS2CLQ60I27 953 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 MED25Q71SY5 747 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 NKAPQ8N5F7 415 aaKnown RBP6.86□□□□□ -1.31
LIMA1-202ENST00000394943 PDPRQ8NCN5 879 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 TSPAN17Q96FV3 270 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 VPS39Q96JC1 886 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 SLC30A3Q99726 388 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 PITPNM3Q9BZ71 974 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 FAM117AQ9C073 453 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 AASDHPPTQ9NRN7 309 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 ACSL6Q9UKU0 697 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 SSUH2Q9Y2M2 353 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 TMEM98Q9Y2Y6 226 aa6.86□□□□□ -1.31
LIMA1-202ENST00000394943 A8MX80 341 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 C1orf105O95561 183 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 EML2O95834 649 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 C8GP07360 202 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 CELA2BP08218 269 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 ITGA2BP08514 1039 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 RHOXF2BP0C7M4 288 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 SLC35E2BP0CK96 405 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 NAA20P61599 178 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 GPLD1P80108 840 aa6.85□□□□□ -1.31
LIMA1-202ENST00000394943 MRPS25P82663 173 aaKnown RBP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 TRA2AQ13595 282 aaKnown RBP eCLIP6.85□□□□□ -1.31
LIMA1-202ENST00000394943 NR0B2Q15466 257 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms