RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ENO3P13929 434 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-202ENST00000372405 PON2Q15165 354 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 FBXW10Q5XX13 1052 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 NLRP8Q86W28 1048 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 PHYKPLQ8IUZ5 450 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 LILRA3Q8N6C8 439 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-202ENST00000372405 POU5F2Q8N7G0 328 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 IL17RCQ8NAC3 791 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 PLA2G15Q8NCC3 412 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 PPM1EQ8WY54 764 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 RHBDF1Q96CC6 855 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 MARK4Q96L34 752 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 GABRG3Q99928 467 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 TMEM79Q9BSE2 394 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 MKRN2Q9H000 416 aaKnown RBP13.53□□□□□ -0.24
PTPRF-202ENST00000372405 GULP1Q9UBP9 304 aa13.53□□□□□ -0.24
PTPRF-202ENST00000372405 NPC1O15118 1278 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 LILRB5O75023 590 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 PRLHRP49683 370 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 RPS14P62263 151 aaKnown RBP13.52□□□□□ -0.24
PTPRF-202ENST00000372405 ELF3P78545 371 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-202ENST00000372405 KLF10Q13118 480 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 ZXDCQ2QGD7 858 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-202ENST00000372405 ZNF658BQ4V348 819 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-202ENST00000372405 PLEKHS1Q5SXH7 462 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 NXNQ6DKJ4 435 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 RAET1GQ6H3X3 334 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-202ENST00000372405 RASGRP3Q8IV61 690 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 OR52B6Q8NGF0 335 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 ACTRT2Q8TDY3 377 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 CXorf40AQ8TE69 158 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 ASB11Q8WXH4 323 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 ELMO1Q92556 727 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 CATSPER2Q96P56 530 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 HGH1Q9BTY7 390 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 SLC6A17Q9H1V8 727 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 KCNK12Q9HB15 430 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 RDH14Q9HBH5 336 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 CD248Q9HCU0 757 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 G3BP2Q9UN86 482 aaKnown RBP13.52□□□□□ -0.24
PTPRF-202ENST00000372405 PDE10AQ9Y233 779 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 PIAS3Q9Y6X2 628 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 TRIOO75962 3097 aa13.52□□□□□ -0.24
PTPRF-202ENST00000372405 TMEM265A0A087WTH1 108 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 A0A1W2PP55 124 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 A0A1W2PQF6 199 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 KRT87PA6NCN2 255 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 SYNCRIPO60506 623 aaKnown RBP13.52□□□□□ -0.25
PTPRF-202ENST00000372405 SLCO2B1O94956 709 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 VCLP18206 1134 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 COL9A1P20849 921 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 NTSR1P30989 418 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 GDF5P43026 501 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 GPR1P46091 355 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 HSPA7P48741 367 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 RASSF2P50749 326 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 NAA25Q14CX7 972 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 XKR5Q6UX68 686 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 CHSY3Q70JA7 882 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 ADGRG6Q86SQ4 1221 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 SLC44A3Q8N4M1 653 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 AFAP1L2Q8N4X5 818 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 CPSF7Q8N684 471 aaKnown RBP13.52□□□□□ -0.25
PTPRF-202ENST00000372405 DCBLD1Q8N8Z6 715 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 CEP70Q8NHQ1 597 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 TWIST2Q8WVJ9 160 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 C19orf60Q96EN9 201 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 BTBD10Q9BSF8 475 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 CADM1Q9BY67 442 aaKnown RBP13.52□□□□□ -0.25
PTPRF-202ENST00000372405 TRPV5Q9NQA5 729 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 FAM8A1Q9UBU6 413 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 LIMD1Q9UGP4 676 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 ST14Q9Y5Y6 855 aa13.52□□□□□ -0.25
PTPRF-202ENST00000372405 ATP6AP2A0A1C7CYW4 349 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 IGLON5A6NGN9 336 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 SHISA7A6NL88 538 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 B2RBV5 119 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 GFYI3L273 518 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 SOX1O00570 391 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 OR7A17O14581 309 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 AP1G1O43747 822 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 ATP6AP2O75787 350 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 ESRRBO95718 433 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 MLYCDO95822 493 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 ADH1BP00325 375 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 FTH1P02794 183 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 MPC1LP0DKB6 136 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 C5AR1P21730 350 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 ERVPABLB-1P60509 514 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 NAA20P61599 178 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 TMEM220Q6QAJ8 160 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 LARP4Q71RC2 724 aaKnown RBP eCLIP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 GOLGA7Q7Z5G4 137 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 KIRREL3Q8IZU9 778 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 HDDC3Q8N4P3 179 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 TEX9Q8N6V9 391 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 RBM15BQ8NDT2 890 aaKnown RBP13.51□□□□□ -0.25
PTPRF-202ENST00000372405 OR56A4Q8NGH8 313 aa13.51□□□□□ -0.25
PTPRF-202ENST00000372405 UBTD2Q8WUN7 234 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms