RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TBL1XO60907 577 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 EFNA1P20827 205 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 CD83Q01151 205 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 KCNJ11Q14654 390 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 TGFBIQ15582 683 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 ZNF730Q6ZMV8 503 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 ZBTB26Q9HCK0 441 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 C11orf16Q9NQ32 467 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 SMIM28A0A1B0GU29 152 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 FAM86C2PA6NEL3 165 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 CPNE3O75131 537 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 SIX3O95343 332 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 GOT2P00505 430 aaKnown RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 PRLP01236 227 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 ERVK-8P63133 956 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 SGCGQ13326 291 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 LSAMPQ13449 338 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 GLB1L3Q8NCI6 653 aaPredicted RBP19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 SLC27A5Q9Y2P5 690 aa19.28■□□□□ 0.68
CCDC88B-202ENST00000356786 HIST1H2ABP04908 130 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 RORCP51449 518 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 DCDC1P59894 354 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 PCBP1Q15365 356 aaKnown RBP eCLIP19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 HIST3H2AQ7L7L0 130 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 HIST1H2ACQ93077 130 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 MAGEB17A8MXT2 336 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 CCNB2O95067 398 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 VNN1O95497 513 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 MYCLP1P12525 358 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 IMPDH1P20839 514 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 ARL2P36404 184 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 CHRNA4P43681 627 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 BRCC3P46736 316 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 RPIAP49247 311 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 HNMTP50135 292 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 SMU1Q2TAY7 513 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 RFTN2Q52LD8 501 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 KAT2AQ92830 837 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 NFKBIZQ9BYH8 718 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 RSPH9Q9H1X1 276 aaPredicted RBP19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 KCTD5Q9NXV2 234 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 ACTR3BQ9P1U1 418 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 DERAQ9Y315 318 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 FGBP02675 491 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 POM121L1PQ3SYA9 428 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 HLA-DQA1Q5Y7H0 255 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 CERS6Q6ZMG9 384 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 MAN2B2Q9Y2E5 1009 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 SNX10Q9Y5X0 201 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 KCPQ6ZWJ8 1503 aa19.27■□□□□ 0.68
CCDC88B-202ENST00000356786 PRPS2P11908 318 aa19.27■□□□□ 0.67
CCDC88B-202ENST00000356786 MBTD1Q05BQ5 628 aa19.27■□□□□ 0.67
CCDC88B-202ENST00000356786 PCDH1Q08174 1060 aa19.27■□□□□ 0.67
CCDC88B-202ENST00000356786 DPYSL2Q16555 572 aa19.27■□□□□ 0.67
CCDC88B-202ENST00000356786 MBLAC2Q68D91 279 aa19.27■□□□□ 0.67
CCDC88B-202ENST00000356786 GPR152Q8TDT2 470 aa19.27■□□□□ 0.67
CCDC88B-202ENST00000356786 ZFYVE1Q9HBF4 777 aa19.27■□□□□ 0.67
CCDC88B-202ENST00000356786 XPNPEP1Q9NQW7 623 aa19.27■□□□□ 0.67
CCDC88B-202ENST00000356786 MIOSQ9NXC5 875 aa19.27■□□□□ 0.67
CCDC88B-202ENST00000356786 PDHXO00330 501 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 IL7RP16871 459 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 RPS14P62263 151 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 HJURPQ8NCD3 748 aaPredicted RBP19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 NTPCRQ9BSD7 190 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 SLC35C2Q9NQQ7 365 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 C1orf109Q9NX04 203 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 TAS2R7Q9NYW3 318 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 RPL9P32969 192 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 GPD2P43304 727 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 C2orf80Q0P641 193 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 DDX59Q5T1V6 619 aaKnown RBP eCLIP19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 ZFP3Q96NJ6 502 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 SIRPGQ9P1W8 387 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 A8MT66 165 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 E9PAM4 449 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 NDUFB5O43674 189 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 MYLK3Q32MK0 819 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 GALNT12Q8IXK2 581 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 GPC2Q8N158 579 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 ZNF420Q8TAQ5 688 aaPredicted RBP19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 FNDC8Q8TC99 324 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 MAT2BQ9NZL9 334 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 TBC1D24Q9ULP9 559 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 HDCP19113 662 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 MVKQ03426 396 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 IFI44LQ53G44 452 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 ZNF773Q6PK81 442 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 ZNF517Q6ZMY9 492 aaPredicted RBP19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 TMPRSS11BQ86T26 416 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 SEC14L1Q92503 715 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 ZNF516Q92618 1163 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 BTN2A3PQ96KV6 586 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 ASF1AQ9Y294 204 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 RAI2Q9Y5P3 530 aa19.26■□□□□ 0.67
CCDC88B-202ENST00000356786 CDH5P33151 784 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 FCGRTP55899 365 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 HERVK_113P63132 956 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 CGREF1Q99674 301 aa19.25■□□□□ 0.67
CCDC88B-202ENST00000356786 ERVK-6Q9BXR3 956 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms