RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SLC38A7Q9NVC3 462 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ELOVL2Q9NXB9 296 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 RRN3Q9NYV6 651 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SUN2Q9UH99 717 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 RASAL2Q9UJF2 1139 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 MTUS1Q9ULD2 1270 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SMG5Q9UPR3 1016 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 ANKRD6Q9Y2G4 727 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 GPR45Q9Y5Y3 372 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 GMEB1Q9Y692 573 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CEP290O15078 2479 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 NCKAP5O14513 1909 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 EPOPA6NHQ4 379 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SLC38A8A6NNN8 435 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 TNPO2O14787 897 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 RGS16O15492 202 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 TAPBPO15533 448 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CCNT2O60583 730 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 SEMA7AO75326 666 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SPAG6O75602 509 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 RSL1D1O76021 490 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 IVLP07476 585 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CTSLP07711 333 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ODC1P11926 461 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CD1DP15813 335 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 GJA4P35212 333 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 LIMS1P48059 325 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CLCN4P51793 760 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ZNF135P52742 658 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 PLK1P53350 603 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 WNT3AP56704 352 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 WDR5P61964 334 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 SULT2A1Q06520 285 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 IFT88Q13099 833 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 BIRC2Q13490 618 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ENPP2Q13822 863 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 TMED2Q15363 201 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 MUM1Q2TAK8 710 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 KHDC1Q4VXA5 237 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 PYCR3Q53H96 274 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SPANXN3Q5MJ09 141 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 VWA5B1Q5TIE3 1220 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 KIAA0930Q6ICG6 404 aaPredicted RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 HMBOX1Q6NT76 420 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 NCEH1Q6PIU2 408 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 KYAT3Q6YP21 454 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 RPS27LQ71UM5 84 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 KBTBD6Q86V97 674 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 C11orf74Q86VG3 221 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SFTPA1Q8IWL2 248 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ZZZ3Q8IYH5 903 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PIANPQ8IYJ0 282 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ZNF781Q8N8C0 355 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CCDC63Q8NA47 563 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ATAD1Q8NBU5 361 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 FLCNQ8NFG4 579 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 LPGAT1Q92604 370 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 APBB2Q92870 758 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PSMG2Q969U7 264 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SLC45A3Q96JT2 553 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 TNIP3Q96KP6 325 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SCLT1Q96NL6 688 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 FAM111AQ96PZ2 611 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 MYOCQ99972 504 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ELAC2Q9BQ52 826 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 TDRD1Q9BXT4 1180 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 TSPYL1Q9H0U9 437 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 DHX35Q9H5Z1 703 aaKnown RBP2.3□□□□□ -2.04
VPS54-202ENST00000354504 LDAHQ9H6V9 325 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 NOD2Q9HC29 1040 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PNPOQ9NVS9 261 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ZDHHC7Q9NXF8 308 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 SENP1Q9P0U3 644 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ABCD2Q9UBJ2 740 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ASIC3Q9UHC3 531 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 ZNF148Q9UQR1 794 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 CCL26Q9Y258 94 aa2.3□□□□□ -2.04
VPS54-202ENST00000354504 PCNX3Q9H6A9 2034 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 NBEAQ8NFP9 2946 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 EXOC1LA0A1B0GW35 172 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TMEM233B4DJY2 109 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 TRIM49D1C9J1S8 452 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 UPK1AO00322 258 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 SDHDO14521 159 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 KPNA5O15131 536 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 INSIG1O15503 277 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 KDELR3O43731 214 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PRPSAP2O60256 369 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 GAS8O95995 478 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PLA2G1BP04054 148 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 RPLP2P05387 115 aaKnown RBP2.29□□□□□ -2.04
VPS54-202ENST00000354504 RHCEP18577 417 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ITGAXP20702 1163 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CCND1P24385 295 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 ACVR2AP27037 513 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PCSK1P29120 753 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 IL12AP29459 219 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 CYP2C18P33260 490 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PIK3CBP42338 1070 aa2.29□□□□□ -2.04
VPS54-202ENST00000354504 PRIM2P49643 509 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms