RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 NKIRAS1Q9NYS0 192 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 APOBEC3BQ9UH17 382 aaKnown RBP9.05□□□□□ -0.96
USP4-202ENST00000351842 ST14Q9Y5Y6 855 aa9.05□□□□□ -0.96
USP4-202ENST00000351842 PABPN1LA6NDY0 278 aaKnown RBP9.04□□□□□ -0.96
USP4-202ENST00000351842 H3BM21 787 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 PSMD11O00231 422 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 DLL1O00548 723 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 SH3BGRLO75368 114 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 EML2O95834 649 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 APOA4P06727 396 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 CEACAM5P06731 702 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 SP9P0CG40 484 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 GDF5P43026 501 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 CCR10P46092 362 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 CCT5P48643 541 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 IL2P60568 153 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 KIF19Q2TAC6 998 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 LVRNQ6Q4G3 990 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 LRRTM4Q86VH4 590 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 ZBTB2Q8N680 514 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 MED8Q96G25 268 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 WDR92Q96MX6 357 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 GPR22Q99680 433 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 ZNF395Q9H8N7 513 aaPredicted RBP9.04□□□□□ -0.96
USP4-202ENST00000351842 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.04□□□□□ -0.96
USP4-202ENST00000351842 MARCOQ9UEW3 520 aaPredicted RBP9.04□□□□□ -0.96
USP4-202ENST00000351842 KLHL3Q9UH77 587 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 IKZF3Q9UKT9 509 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 RAB23Q9ULC3 237 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 UBXN8O00124 270 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 SIX3O95343 332 aaPredicted RBP9.04□□□□□ -0.96
USP4-202ENST00000351842 ESR1P03372 595 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 KITP10721 976 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 MYCLP1P12525 358 aaPredicted RBP9.04□□□□□ -0.96
USP4-202ENST00000351842 SERPINB9P50453 376 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 CDH13P55290 713 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 SRP54P61011 504 aaKnown RBP9.04□□□□□ -0.96
USP4-202ENST00000351842 PLCL1Q15111 1095 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 PFKFB4Q16877 469 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 ALG11Q2TAA5 492 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 PLK5Q496M5 336 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 THEMIS2Q5TEJ8 643 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 FAM45BPQ6NSW5 357 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 LONP2Q86WA8 852 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 CBARPQ8N350 705 aaPredicted RBP9.04□□□□□ -0.96
USP4-202ENST00000351842 FAM76AQ8TAV0 307 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 FAM45AQ8TCE6 357 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 CD200R1Q8TD46 325 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 C12orf66Q96MD2 445 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 UCKL1Q9NWZ5 548 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 CD274Q9NZQ7 290 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 MED16Q9Y2X0 877 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 SNX11Q9Y5W9 270 aa9.04□□□□□ -0.96
USP4-202ENST00000351842 CXorf51AA0A1B0GTR3 108 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 H7C0S8 307 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 GSTA2P09210 222 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 CHN1P15882 459 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 CD27P26842 260 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 TYSND1Q2T9J0 566 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 RNF187Q5TA31 235 aaPredicted RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 FOXR1Q6PIV2 292 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 LRIG3Q6UXM1 1119 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 NRSN1Q8IZ57 195 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 OR10G6Q8NH81 332 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 HCAR2Q8TDS4 363 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 ATOH1Q92858 354 aaPredicted RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 ULK4Q96C45 1275 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 ROPN1BQ9BZX4 212 aaPredicted RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 DUSP15Q9H1R2 295 aaPredicted RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 ROPN1Q9HAT0 212 aaPredicted RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 NSMCE4AQ9NXX6 385 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 ADAMTS6Q9UKP5 1117 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 RNF112Q9ULX5 631 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 WDR37Q9Y2I8 494 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 ADAMTS9Q9P2N4 1935 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 CACNA1GO43497 2377 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 TLR4O00206 839 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 ZNF37AP17032 561 aaPredicted RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 KCNC1P48547 511 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 SPDYCQ5MJ68 293 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 WDR45BQ5MNZ6 344 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 KIAA0408Q6ZU52 694 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 TRIM48Q8IWZ4 208 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 CENPLQ8N0S6 344 aaPredicted RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 MYO1HQ8N1T3 1032 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 FSTL5Q8N475 847 aaPredicted RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 DDHD1Q8NEL9 900 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 PTERQ96BW5 349 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 WWP1Q9H0M0 922 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 SPATS2LQ9NUQ6 558 aaKnown RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 INTS10Q9NVR2 710 aaKnown RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 STATHP02808 62 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 SLC35G4P0C7Q5 338 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 GNSP15586 552 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 TYRP1P17643 537 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 MAGEA9P43362 315 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 AFF3P51826 1226 aaKnown RBP9.03□□□□□ -0.96
USP4-202ENST00000351842 POU4F1Q01851 419 aa9.03□□□□□ -0.96
USP4-202ENST00000351842 ILF3Q12906 894 aaKnown RBP eCLIP9.03□□□□□ -0.96
USP4-202ENST00000351842 NFATC4Q14934 902 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms