RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 GPR156Q8NFN8 814 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 NCSTNQ92542 709 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 PRICKLE1Q96MT3 831 aaPredicted RBP14.1□□□□□ -0.15
COL7A1-201ENST00000328333 PTPRHQ9HD43 1115 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 GPATCH2LQ9NWQ4 482 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 FSCN2O14926 492 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 GMFGO60234 142 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 OR2L2Q8NH16 312 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 PLEKHO2Q8TD55 490 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 ASB12Q8WXK4 309 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 PIGKQ92643 395 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 NKD2Q969F2 451 aaPredicted RBP14.1□□□□□ -0.15
COL7A1-201ENST00000328333 PRMT6Q96LA8 375 aaPredicted RBP14.1□□□□□ -0.15
COL7A1-201ENST00000328333 N6AMT1Q9Y5N5 214 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 NAV1Q8NEY1 1877 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 UBXN7O94888 489 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 E2F1Q01094 437 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 EDEM1Q92611 657 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 DPF3Q92784 378 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 PORCNQ9H237 461 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 NELFAQ9H3P2 528 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 VNN2O95498 520 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 IFNA2P01563 188 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 CFL1P23528 166 aaKnown RBP14.1□□□□□ -0.15
COL7A1-201ENST00000328333 SYT16Q17RD7 645 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 LRRC70Q7Z2Q7 622 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 DGLUCYQ7Z3D6 616 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 S100A16Q96FQ6 103 aaKnown RBP14.1□□□□□ -0.15
COL7A1-201ENST00000328333 IKZF2Q9UKS7 526 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 PLD2O14939 933 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 PPP3CAQ08209 521 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 SH3D19Q5HYK7 790 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 C10orf62Q5T681 223 aaPredicted RBP14.1□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF767PQ75MW2 155 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 TAS2R3Q9NYW6 316 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 GBX2P52951 348 aaPredicted RBP14.1□□□□□ -0.15
COL7A1-201ENST00000328333 MERTKQ12866 999 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF782Q6ZMW2 699 aaPredicted RBP14.1□□□□□ -0.15
COL7A1-201ENST00000328333 DMRTB1Q96MA1 342 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF490Q9ULM2 529 aaPredicted RBP14.1□□□□□ -0.15
COL7A1-201ENST00000328333 SCN9AQ15858 1988 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 TAF1CQ15572 869 aaPredicted RBP14.1□□□□□ -0.15
COL7A1-201ENST00000328333 COL28A1Q2UY09 1125 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 FAAH2Q6GMR7 532 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 MIPEPQ99797 713 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 ITPAQ9BY32 194 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 GBA3Q9H227 469 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 TREM1Q9NP99 234 aa14.1□□□□□ -0.15
COL7A1-201ENST00000328333 FAM234BA2RU67 622 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 ORC1Q13415 861 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF404Q494X3 552 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 FAM46CQ5VWP2 391 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 GALNT7Q86SF2 657 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 EFCAB3Q8N7B9 438 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 ZBED6CLQ96FA7 236 aaPredicted RBP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 BCL7BQ9BQE9 202 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 TBC1D17Q9HA65 648 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 C1orf109Q9NX04 203 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 PIK3C2BO00750 1634 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 A0A087X0B3 334 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 TSTD3H0UI37 97 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 H0Y858 1186 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 HLA-DPB1P04440 258 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 GPR65Q8IYL9 337 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 KCNN1Q92952 543 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 HDAC10Q969S8 669 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 EIF1AYO14602 144 aaKnown RBP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 GADD45AP24522 165 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 EIF1AXP47813 144 aaKnown RBP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 KHDC1Q4VXA5 237 aaKnown RBP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 STYK1Q6J9G0 422 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 LRRC55Q6ZSA7 311 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 ZNF431Q8TF32 576 aaPredicted RBP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 MTFMTQ96DP5 389 aaKnown RBP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 DUSP9Q99956 384 aaKnown RBP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 KCTD5Q9NXV2 234 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 DDX6P26196 483 aaKnown RBP eCLIP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 SLC25A52Q3SY17 297 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 OGFOD2Q6N063 350 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 STRADAQ7RTN6 431 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 COPS8Q99627 209 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 SGK2Q9HBY8 427 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 U3KQV3 271 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 DCDC2CA8MYV0 355 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 GRID2O43424 1007 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 SLC19A2O60779 497 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 USP12O75317 370 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 IQSEC1Q6DN90 963 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 FAM83AQ86UY5 434 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 CHST4Q8NCG5 386 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 TTLQ8NG68 377 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 SLC7A6OSQ96CW6 309 aaPredicted RBP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 NDC1Q9BTX1 674 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 CSTF2P33240 577 aaKnown RBP eCLIP14.09□□□□□ -0.15
COL7A1-201ENST00000328333 DET1Q7L5Y6 550 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 GHDCQ8N2G8 530 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 ARRDC4Q8NCT1 418 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 ADAMTS15Q8TE58 950 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 SLC39A3Q9BRY0 314 aa14.09□□□□□ -0.15
COL7A1-201ENST00000328333 EDARQ9UNE0 448 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms