RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 TDRD1Q9BXT4 1180 aaKnown RBP10.77□□□□□ -0.69
LSM3-201ENST00000306024 ZBP1Q9H171 429 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 TOR3AQ9H497 397 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 COMMD8Q9NX08 183 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 CACNA2D2Q9NY47 1150 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 ACOT9Q9Y305 439 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 SIP14410 1827 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 E9PAM4 449 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 PPP3CCP48454 512 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 RFTN1Q14699 578 aaPredicted RBP10.77□□□□□ -0.69
LSM3-201ENST00000306024 TCAIMQ8N3R3 496 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 SPPL3Q8TCT6 385 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 FAR1Q8WVX9 515 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 ATP13A3Q9H7F0 1226 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 TOR4AQ9NXH8 423 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 NDUFAF1Q9Y375 327 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 KRT87PA6NCN2 255 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 ZNF840PA6NDX5 716 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 RNF103O00237 685 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 ZNF197O14709 1029 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 RGS5O15539 181 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 SEMA3DO95025 777 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 BMP2P12643 396 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 IFI30P13284 250 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 CD1EP15812 388 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 WEE1P30291 646 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 TNK2Q07912 1038 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 NAB1Q13506 487 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 SPANXN2Q5MJ10 180 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 RNF219Q5W0B1 726 aaPredicted RBP10.76□□□□□ -0.69
LSM3-201ENST00000306024 FAM109BQ6ICB4 259 aaPredicted RBP10.76□□□□□ -0.69
LSM3-201ENST00000306024 LINC00523Q86TU6 105 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 P2RY8Q86VZ1 359 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 C12orf76Q8N812 135 aaPredicted RBP10.76□□□□□ -0.69
LSM3-201ENST00000306024 NCLNQ969V3 563 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 PHF21BQ96EK2 531 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 NSMCE2Q96MF7 247 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 NUAK2Q9H093 628 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 DUS2Q9NX74 493 aaKnown RBP10.76□□□□□ -0.69
LSM3-201ENST00000306024 FNIP2Q9P278 1114 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 XPR1Q9UBH6 696 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 COMMD10Q9Y6G5 202 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 CBX4O00257 560 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 ACSL4O60488 711 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 SUPT7LO94864 414 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 OR2B6P58173 313 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 VBP1P61758 197 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 UBE3AQ05086 875 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 NSUN2Q08J23 767 aaKnown RBP eCLIP10.76□□□□□ -0.69
LSM3-201ENST00000306024 CEP78Q5JTW2 689 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 ZNF544Q6NX49 715 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 FKBP9P1Q75LS8 142 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 RALGPS2Q86X27 583 aaPredicted RBP10.76□□□□□ -0.69
LSM3-201ENST00000306024 CIR1Q86X95 450 aaPredicted RBP10.76□□□□□ -0.69
LSM3-201ENST00000306024 HS6ST3Q8IZP7 471 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 OR9I1Q8NGQ6 314 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 ATL1Q8WXF7 558 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 MED30Q96HR3 178 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 BBS2Q9BXC9 721 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 RBM22Q9NW64 420 aaKnown RBP eCLIP10.76□□□□□ -0.69
LSM3-201ENST00000306024 KIAA1522Q9P206 1035 aaPredicted RBP10.76□□□□□ -0.69
LSM3-201ENST00000306024 TCAF2A6NFQ2 919 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 TNFRSF10BO14763 440 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 HS6ST1O60243 411 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 THRBP10828 461 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 MTHFD1P11586 935 aaKnown RBP10.76□□□□□ -0.69
LSM3-201ENST00000306024 NCK1P16333 377 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 EPCAMP16422 314 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 TACR2P21452 398 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 CES5AQ6NT32 575 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 GRASPQ7Z6J2 395 aaPredicted RBP10.76□□□□□ -0.69
LSM3-201ENST00000306024 CDH24Q86UP0 819 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 TBC1D21Q8IYX1 336 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 UBASH3BQ8TF42 649 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 ELMO2Q96JJ3 720 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 VN1R3Q9BXE9 311 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 POMKQ9H5K3 350 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 CPNE5Q9HCH3 593 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 CHRAC1Q9NRG0 131 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 TCAF1Q9Y4C2 921 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 DNAH12Q6ZR08 3092 aa10.76□□□□□ -0.69
LSM3-201ENST00000306024 SAGE2PA6NJ88 616 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 FAM72CH0Y354 149 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 SLC22A1O15245 554 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 COCHO43405 550 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 ATF4P18848 351 aaPredicted RBP10.75□□□□□ -0.69
LSM3-201ENST00000306024 IRS1P35568 1242 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 HTRA4P83105 476 aaPredicted RBP10.75□□□□□ -0.69
LSM3-201ENST00000306024 PLIN5Q00G26 463 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 BNIP2Q12982 314 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 FAM72AQ5TYM5 149 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 FAM72DQ6L9T8 149 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 FSTL4Q6MZW2 842 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 PRMT9Q6P2P2 845 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 TUBA3EQ6PEY2 450 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 FAM72BQ86X60 149 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 OR13F1Q8NGS4 319 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 VPS39Q96JC1 886 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 IL12RB2Q99665 862 aa10.75□□□□□ -0.69
LSM3-201ENST00000306024 UBP1Q9NZI7 540 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms