RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 TRIM15Q9C019 465 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 PFDN4Q9NQP4 134 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 ZIM2Q9NZV7 527 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 TBX21Q9UL17 535 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 TNPO3Q9Y5L0 923 aaKnown RBP19.75■□□□□ 0.75
VPS53-201ENST00000291074 PLXNB3Q9ULL4 1909 aa19.75■□□□□ 0.75
VPS53-201ENST00000291074 LTBP2Q14767 1821 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 TRBV5-4A0A0C4DH59 114 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 FAM234BA2RU67 622 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 PDLIM1O00151 329 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 PLOD2O00469 737 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 LSM1O15116 133 aaKnown RBP19.74■□□□□ 0.75
VPS53-201ENST00000291074 TGM5O43548 720 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 RSL1D1O76021 490 aaKnown RBP19.74■□□□□ 0.75
VPS53-201ENST00000291074 IGSF6O95976 241 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 RGS4P49798 205 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 PLIN5Q00G26 463 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 ARHGEF6Q15052 776 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 RFTN2Q52LD8 501 aaPredicted RBP19.74■□□□□ 0.75
VPS53-201ENST00000291074 NANOGP8Q6NSW7 305 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 ZFAND4Q86XD8 727 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 EPHX4Q8IUS5 362 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 ZBTB2Q8N680 514 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 ANKFN1Q8N957 763 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 TMEM79Q9BSE2 394 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 FAM126AQ9BYI3 521 aaPredicted RBP19.74■□□□□ 0.75
VPS53-201ENST00000291074 GRIP2Q9C0E4 1043 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 NANOGQ9H9S0 305 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 PTBP2Q9UKA9 531 aaKnown RBP19.74■□□□□ 0.75
VPS53-201ENST00000291074 DGKQP52824 942 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 INPP5AQ14642 412 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 MILR1Q7Z6M3 343 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 TMC8Q8IU68 726 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 ZNF696Q9H7X3 374 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 FARSBQ9NSD9 589 aaKnown RBP19.74■□□□□ 0.75
VPS53-201ENST00000291074 ABCB8Q9NUT2 735 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 OARD1Q9Y530 152 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 V9GYQ6 96 aa19.74■□□□□ 0.75
VPS53-201ENST00000291074 SOCS5O75159 536 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 BMP2P12643 396 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 LAG3P18627 525 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 PSMA4P25789 261 aaKnown RBP19.73■□□□□ 0.75
VPS53-201ENST00000291074 HMOX2P30519 316 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 SPAM1P38567 509 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 AP5B1Q2VPB7 878 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 GPRC6AQ5T6X5 926 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 CYP20A1Q6UW02 462 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 HTR3DQ70Z44 454 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 GALNT15Q8N3T1 639 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 OR2AP1Q8NGE2 309 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 HEBP1Q9NRV9 189 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 TMEM39AQ9NV64 488 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 DUS2Q9NX74 493 aaKnown RBP19.73■□□□□ 0.75
VPS53-201ENST00000291074 WWOXQ9NZC7 414 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 KIAA1522Q9P206 1035 aaPredicted RBP19.73■□□□□ 0.75
VPS53-201ENST00000291074 CROCCQ5TZA2 2017 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 GLUD1P00367 558 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 OTCP00480 354 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 SRCP12931 536 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 DGKAP23743 735 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 SERPINA4P29622 427 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 PRKG2Q13237 762 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 CYP51A1Q16850 503 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 MPPE1Q53F39 396 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 CRTC1Q6UUV9 634 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 NXPE1Q8N323 547 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 OSBPL11Q9BXB4 747 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 LRRC3Q9BY71 257 aa19.73■□□□□ 0.75
VPS53-201ENST00000291074 MT-ND1P03886 318 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 NADK2Q4G0N4 442 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 LRRC66Q68CR7 880 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 RALGPS2Q86X27 583 aaPredicted RBP19.72■□□□□ 0.75
VPS53-201ENST00000291074 CMTR2Q8IYT2 770 aaKnown RBP19.72■□□□□ 0.75
VPS53-201ENST00000291074 CBR4Q8N4T8 237 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 FIBINQ8TAL6 211 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 PPM1MQ96MI6 270 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 LATS2Q9NRM7 1088 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 AGPAT4Q9NRZ5 378 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 H0YJX3 145 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 ITGB8P26012 769 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 SELPLGQ14242 412 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 CARM1Q86X55 608 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 CCT7Q99832 543 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 TRIM4Q9C037 500 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 ANGPTL3Q9Y5C1 460 aa19.72■□□□□ 0.75
VPS53-201ENST00000291074 LEFTY2O00292 366 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 IL10P22301 178 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 HLA-FP30511 346 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 RPL5P46777 297 aaKnown RBP19.71■□□□□ 0.75
VPS53-201ENST00000291074 RPL38P63173 70 aaKnown RBP19.71■□□□□ 0.75
VPS53-201ENST00000291074 EMX2Q04743 252 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 SGO1Q5FBB7 561 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 IRAK1BP1Q5VVH5 260 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 PPP4R4Q6NUP7 873 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 CPXM2Q8N436 756 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 CCL26Q9Y258 94 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 TCRBV5S2A0A599 114 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 ANKRD28O15084 1053 aa19.71■□□□□ 0.75
VPS53-201ENST00000291074 HNRNPRO43390 633 aaKnown RBP19.71■□□□□ 0.75
VPS53-201ENST00000291074 LILRB3O75022 631 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms