RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 UPK3BL1B0FP48 263 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 UPK3BL2E5RIL1 263 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 NR2F6P10588 404 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 CPN2P22792 545 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 AVPR1BP47901 424 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 ZNF57Q68EA5 555 aaPredicted RBP18.28■□□□□ 0.52
PCDH1-201ENST00000287008 RNF19BQ6ZMZ0 732 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 TBC1D21Q8IYX1 336 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 AVL9Q8NBF6 648 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 ARHGAP39Q9C0H5 1083 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 ELL3Q9HB65 397 aaPredicted RBP18.28■□□□□ 0.52
PCDH1-201ENST00000287008 DNAJB4Q9UDY4 337 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 TMEM150CB9EJG8 249 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 PIRO00625 290 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 TTKP33981 857 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 RYKP34925 604 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 RNASE11Q8TAA1 199 aaKnown RBP18.28■□□□□ 0.52
PCDH1-201ENST00000287008 MYDGFQ969H8 173 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 TRAPPC9Q96Q05 1148 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 NMUR2Q9GZQ4 415 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 CRTAC1Q9NQ79 661 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 CNTRLQ7Z7A1 2325 aa18.28■□□□□ 0.52
PCDH1-201ENST00000287008 TMEM63AO94886 807 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 SAGP10523 405 aaPredicted RBP18.27■□□□□ 0.52
PCDH1-201ENST00000287008 SLC13A2Q13183 592 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 YTHDF3Q7Z739 585 aaKnown RBP18.27■□□□□ 0.52
PCDH1-201ENST00000287008 C1orf109Q9NX04 203 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 J3KR12 359 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 K7EPI3 171 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 HCRTO43612 131 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 NBNO60934 754 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 UBXN7O94888 489 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 DGUOKQ16854 277 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 GCNT6Q5T4J0 391 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 GLYATQ6IB77 296 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 SIX5Q8N196 739 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 NPY6RQ99463 290 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 DPYSL5Q9BPU6 564 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 ZNF446Q9NWS9 450 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 B3GALT2O43825 422 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 IQCF3P0C7M6 154 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 ZNF30P17039 623 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 FAM43BQ6ZT52 329 aaPredicted RBP18.27■□□□□ 0.52
PCDH1-201ENST00000287008 TPRG1Q6ZUI0 275 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 ZNF540Q8NDQ6 660 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 TMEM109Q9BVC6 243 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 CALML5Q9NZT1 146 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 CDC14AQ9UNH5 594 aa18.27■□□□□ 0.52
PCDH1-201ENST00000287008 LEFTY2O00292 366 aa18.27■□□□□ 0.51
PCDH1-201ENST00000287008 ENTPD5O75356 428 aa18.27■□□□□ 0.51
PCDH1-201ENST00000287008 ANO7Q6IWH7 933 aa18.27■□□□□ 0.51
PCDH1-201ENST00000287008 TDRPQ86YL5 185 aa18.27■□□□□ 0.51
PCDH1-201ENST00000287008 EFCAB11Q9BUY7 163 aa18.27■□□□□ 0.51
PCDH1-201ENST00000287008 HCN3Q9P1Z3 774 aa18.27■□□□□ 0.51
PCDH1-201ENST00000287008 MAP4K5Q9Y4K4 846 aa18.27■□□□□ 0.51
PCDH1-201ENST00000287008 ANKRD66B4E2M5 251 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 DLDP09622 509 aaKnown RBP18.26■□□□□ 0.51
PCDH1-201ENST00000287008 VIPR1P32241 457 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 PTGIRP43119 386 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 TAS2R50P59544 299 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 ELF3P78545 371 aaPredicted RBP18.26■□□□□ 0.51
PCDH1-201ENST00000287008 ZNF460Q14592 562 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 C22orf39Q6P5X5 142 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 FAM98AQ8NCA5 519 aaKnown RBP18.26■□□□□ 0.51
PCDH1-201ENST00000287008 TTLQ8NG68 377 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 REXO4Q9GZR2 422 aaKnown RBP18.26■□□□□ 0.51
PCDH1-201ENST00000287008 IRS2Q9Y4H2 1338 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 NIPSNAP2O75323 286 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 EDNRBP24530 442 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 TMED10P49755 219 aaKnown RBP18.26■□□□□ 0.51
PCDH1-201ENST00000287008 CLCNKAP51800 687 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 PSMD4P55036 377 aaKnown RBP18.26■□□□□ 0.51
PCDH1-201ENST00000287008 ABRAXAS1Q6UWZ7 409 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 CADM2Q8N3J6 435 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 NUSAP1Q9BXS6 441 aaKnown RBP18.26■□□□□ 0.51
PCDH1-201ENST00000287008 ELAC1Q9H777 363 aaKnown RBP18.26■□□□□ 0.51
PCDH1-201ENST00000287008 PALMDQ9NP74 551 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 IL23AQ9NPF7 189 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 PEAK1Q9H792 1746 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 OR51F1A6NGY5 319 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 B4DGG1 531 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 MTX2O75431 263 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 CFHP08603 1231 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 VEGFBP49765 207 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 SERINC3Q13530 473 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 CHRNA6Q15825 494 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 CYP1B1Q16678 543 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 ZNF730Q6ZMV8 503 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 GALNT8Q9NY28 637 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 C15orf41Q9Y2V0 281 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 ZNF37AP17032 561 aaPredicted RBP18.26■□□□□ 0.51
PCDH1-201ENST00000287008 CTSOP43234 321 aaPredicted RBP18.26■□□□□ 0.51
PCDH1-201ENST00000287008 RALGPS1Q5JS13 557 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 PAQR3Q6TCH7 311 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 UXS1Q8NBZ7 420 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 SLC47A1Q96FL8 570 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 TFB2MQ9H5Q4 396 aaKnown RBP18.26■□□□□ 0.51
PCDH1-201ENST00000287008 ANKHQ9HCJ1 492 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 TOR4AQ9NXH8 423 aa18.26■□□□□ 0.51
PCDH1-201ENST00000287008 SIRPGQ9P1W8 387 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms