RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ZC3HC1Q86WB0 502 aaKnown RBP10.62□□□□□ -0.71
CD44-201ENST00000263398 GPR65Q8IYL9 337 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 MFSD1Q9H3U5 465 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 SOHLH2Q9NX45 425 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 FNIP2Q9P278 1114 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 RBPJLQ9UBG7 517 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 TLR6Q9Y2C9 796 aa10.62□□□□□ -0.71
CD44-201ENST00000263398 KDM3BQ7LBC6 1761 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 OR2AG2A6NM03 316 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 AIREO43918 545 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 LGR5O75473 907 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 DHFRP00374 187 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 GNRH1P01148 92 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 FESP07332 822 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 MTTPP55157 894 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 TAF13Q15543 124 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 ZBTB6Q15916 424 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 PAQR3Q6TCH7 311 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 TMPRSS11AQ6ZMR5 421 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 KCTD8Q6ZWB6 473 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 TTC29Q8NA56 475 aaPredicted RBP10.61□□□□□ -0.71
CD44-201ENST00000263398 HPS1Q92902 700 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 CLIP3Q96DZ5 547 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 LPIN3Q9BQK8 851 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 PCDHGB3Q9Y5G1 929 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 GSAPA4D1B5 854 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 A8MT66 165 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 K7EPI3 171 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 EI24O14681 340 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 PLOD3O60568 738 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 CCNDBP1O95273 360 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 PRNPP04156 253 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 SPATA31D3P0C874 917 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 ZNF24P17028 368 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 GNAZP19086 355 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 ZNF132P52740 706 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 MERTKQ12866 999 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 HKDC1Q2TB90 917 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 MSANTD2Q6P1R3 559 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 TIFABQ6ZNK6 161 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 SPATA31D4Q6ZUB0 917 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 PEG10Q86TG7 708 aaKnown RBP10.61□□□□□ -0.71
CD44-201ENST00000263398 C7orf43Q8WVR3 580 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 HTRA1Q92743 480 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 SLC38A4Q969I6 547 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 NARS2Q96I59 477 aaKnown RBP10.61□□□□□ -0.71
CD44-201ENST00000263398 ZNF599Q96NL3 588 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 RSPH9Q9H1X1 276 aaPredicted RBP10.61□□□□□ -0.71
CD44-201ENST00000263398 TNKS2Q9H2K2 1166 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 KAT8Q9H7Z6 458 aaKnown RBP10.61□□□□□ -0.71
CD44-201ENST00000263398 MINDY3Q9H8M7 445 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 NEK6Q9HC98 313 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 TRIM39Q9HCM9 518 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 TMEM138Q9NPI0 162 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 COMMD9Q9P000 198 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 MAP4K5Q9Y4K4 846 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 IRAK3Q9Y616 596 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 AREL1O15033 823 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 DLX3O60479 287 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 HLA-DQB2P05538 268 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 LAMP2P13473 410 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 DNAJB1P25685 340 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 UGT1A5P35504 534 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 MTPNP58546 118 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 SF1Q15637 639 aaKnown RBP10.61□□□□□ -0.71
CD44-201ENST00000263398 CCDC157Q569K6 752 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 LDLRAP1Q5SW96 308 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 FAM180AQ6UWF9 173 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 ZNF730Q6ZMV8 503 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 GJD3Q8N144 294 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 PACRGLQ8N7B6 248 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 OR52J3Q8NH60 311 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 C2orf15Q8WU43 125 aaKnown RBP10.61□□□□□ -0.71
CD44-201ENST00000263398 CANT1Q8WVQ1 401 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 DDX1Q92499 740 aaKnown RBP10.61□□□□□ -0.71
CD44-201ENST00000263398 RAD51AP1Q96B01 352 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 TMEM209Q96SK2 561 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 GPR22Q99680 433 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 CCDC177Q9NQR7 707 aaPredicted RBP10.61□□□□□ -0.71
CD44-201ENST00000263398 PPM1HQ9ULR3 514 aa10.61□□□□□ -0.71
CD44-201ENST00000263398 FCF1Q9Y324 198 aaKnown RBP10.61□□□□□ -0.71
CD44-201ENST00000263398 CHST10O43529 356 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 CAPN15O75808 1086 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 MAGP20916 626 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 NR4A1P22736 598 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 SEPHS1P49903 392 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 RABGGTBP53611 331 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 MAPK12P53778 367 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 ARHGAP1Q07960 439 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 HID1Q8IV36 788 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 SLC43A3Q8NBI5 491 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 ZNF248Q8NDW4 579 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 TOP1MTQ969P6 601 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 CDKN2AIPNLQ96HQ2 116 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 SIGLEC10Q96LC7 697 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 FAM210AQ96ND0 272 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 CHCHD6Q9BRQ6 235 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 KIFC1Q9BW19 673 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 MAT2BQ9NZL9 334 aa10.6□□□□□ -0.71
CD44-201ENST00000263398 STYXL1Q9Y6J8 313 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms