RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 DEFB115Q30KQ5 88 aa12.81□□□□□ -0.36
SNX1-201ENST00000261889 SETMARQ53H47 684 aaPredicted RBP12.81□□□□□ -0.36
SNX1-201ENST00000261889 COLEC12Q5KU26 742 aa12.81□□□□□ -0.36
SNX1-201ENST00000261889 ZNF467Q7Z7K2 595 aaPredicted RBP12.81□□□□□ -0.36
SNX1-201ENST00000261889 OR4L1Q8NH43 312 aa12.81□□□□□ -0.36
SNX1-201ENST00000261889 CAPSLQ8WWF8 208 aa12.81□□□□□ -0.36
SNX1-201ENST00000261889 FUBP1Q96AE4 644 aaKnown RBP12.81□□□□□ -0.36
SNX1-201ENST00000261889 MBOAT4Q96T53 435 aa12.81□□□□□ -0.36
SNX1-201ENST00000261889 SLC9A7Q96T83 725 aa12.81□□□□□ -0.36
SNX1-201ENST00000261889 C6orf62Q9GZU0 229 aaPredicted RBP12.81□□□□□ -0.36
SNX1-201ENST00000261889 RERGLQ9H628 205 aa12.81□□□□□ -0.36
SNX1-201ENST00000261889 FAM118AQ9NWS6 357 aa12.81□□□□□ -0.36
SNX1-201ENST00000261889 GMIPQ9P107 970 aa12.81□□□□□ -0.36
SNX1-201ENST00000261889 HCSTQ9UBK5 93 aa12.81□□□□□ -0.36
SNX1-201ENST00000261889 CA12O43570 354 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 SNAP91O60641 907 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 NDUFS3O75489 264 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 MYO1DO94832 1006 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 PEX11BO96011 259 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 F9P00740 461 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 CTPS1P17812 591 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 NUDT6P53370 316 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 CAP1Q01518 475 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 MVKQ03426 396 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 ZNF235Q14590 738 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 CXCL17Q6UXB2 119 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 ADCK1Q86TW2 530 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 RTL3Q8N8U3 475 aaKnown RBP12.8□□□□□ -0.36
SNX1-201ENST00000261889 MCOLN3Q8TDD5 553 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 IRGQQ8WZA9 623 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 TOP1MTQ969P6 601 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 CCDC126Q96EE4 140 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 CAPNS2Q96L46 248 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 CORO1BQ9BR76 489 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 NSUN3Q9H649 340 aaKnown RBP12.8□□□□□ -0.36
SNX1-201ENST00000261889 ATP13A3Q9H7F0 1226 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 CATSPERBQ9H7T0 1116 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 RIC8BQ9NVN3 520 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 LSM1O15116 133 aaKnown RBP12.8□□□□□ -0.36
SNX1-201ENST00000261889 ATXN1LP0C7T5 689 aaKnown RBP12.8□□□□□ -0.36
SNX1-201ENST00000261889 IDO1P14902 403 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 ACADVLP49748 655 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 KCNQ1P51787 676 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 RCAN2Q14206 197 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 FBXL22Q6P050 247 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 TLK2Q86UE8 772 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 ZCCHC7Q8N3Z6 543 aaKnown RBP12.8□□□□□ -0.36
SNX1-201ENST00000261889 TMEM199Q8N511 208 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 LZICQ8WZA0 190 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 ZUFSPQ96AP4 578 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 IMP4Q96G21 291 aaKnown RBP12.8□□□□□ -0.36
SNX1-201ENST00000261889 ACTL8Q9H568 366 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 FLRT1Q9NZU1 646 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 NINQ8N4C6 2090 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 LOC100506127A0A0U1RQW1 187 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 RECQL5O94762 991 aaPredicted RBP12.8□□□□□ -0.36
SNX1-201ENST00000261889 PRAMEF12O95522 483 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 CA5AP35218 305 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 SCNN1AP37088 669 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 C6orf141Q5SZD1 244 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 AGMOQ6ZNB7 445 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 C16orf59Q7L2K0 433 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 OR2T12Q8NG77 320 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 OR7A2PQ8NGA2 310 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 SLC25A51Q9H1U9 297 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 ACTR8Q9H981 624 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 SPC25Q9HBM1 224 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 FAM105AQ9NUU6 356 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 INTS10Q9NVR2 710 aaKnown RBP12.8□□□□□ -0.36
SNX1-201ENST00000261889 DNMT3BQ9UBC3 853 aaKnown RBP12.8□□□□□ -0.36
SNX1-201ENST00000261889 BOLA1Q9Y3E2 137 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 SNX5Q9Y5X3 404 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 PMF1-BGLAPU3KQ54 211 aa12.8□□□□□ -0.36
SNX1-201ENST00000261889 MYO7AQ13402 2215 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.79□□□□□ -0.36
SNX1-201ENST00000261889 DLGAP3O95886 979 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 DBTP11182 482 aaKnown RBP12.79□□□□□ -0.36
SNX1-201ENST00000261889 CD52P31358 61 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 GKP32189 559 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 EMX1Q04741 257 aaPredicted RBP12.79□□□□□ -0.36
SNX1-201ENST00000261889 BNIP2Q12982 314 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 CRHR2Q13324 411 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 KCNJ8Q15842 424 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 OVOS1Q6IE37 1185 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 TBC1D21Q8IYX1 336 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 CALML6Q8TD86 181 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 TSSK3Q96PN8 268 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 DPH2Q9BQC3 489 aaPredicted RBP12.79□□□□□ -0.36
SNX1-201ENST00000261889 RUBCNLQ9H714 662 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 AIG1Q9NVV5 245 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 CDH7Q9ULB5 785 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 NYNRINQ9P2P1 1898 aaKnown RBP12.79□□□□□ -0.36
SNX1-201ENST00000261889 E5RI56 91 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 AQP9O43315 295 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 SPNP16150 400 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 FDXRP22570 491 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 CCL23P55773 120 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 RPS24P62847 133 aaKnown RBP12.79□□□□□ -0.36
SNX1-201ENST00000261889 IRF5Q13568 498 aa12.79□□□□□ -0.36
SNX1-201ENST00000261889 DUSP28Q4G0W2 176 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms