RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ANO7Q6IWH7 933 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 PRMT9Q6P2P2 845 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 TMPRSS11BQ86T26 416 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 TRIM74Q86UV6 250 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 TNIP2Q8NFZ5 429 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 OR2T3Q8NH03 318 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 OSBPL6Q9BZF3 934 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 YY1AP1Q9H869 796 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 ZNF395Q9H8N7 513 aaPredicted RBP11.4□□□□□ -0.58
VPS4A-201ENST00000254950 CCDC177Q9NQR7 707 aaPredicted RBP11.4□□□□□ -0.58
VPS4A-201ENST00000254950 ORC6Q9Y5N6 252 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 WDR81Q562E7 1941 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 MROH6A6NGR9 719 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 SGTAO43765 313 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 E2F6O75461 281 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 ACP5P13686 325 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 ARCN1P48444 511 aaKnown RBP11.4□□□□□ -0.58
VPS4A-201ENST00000254950 PGGT1BP53609 377 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 TAF11Q15544 211 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 TRMT5Q32P41 509 aaKnown RBP11.4□□□□□ -0.58
VPS4A-201ENST00000254950 HID1Q8IV36 788 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 PIANPQ8IYJ0 282 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 RHEBL1Q8TAI7 183 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 BTN2A2Q8WVV5 523 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 C10orf82Q8WW14 230 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 HIC2Q96JB3 615 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 MMADHCQ9H3L0 296 aaPredicted RBP11.4□□□□□ -0.58
VPS4A-201ENST00000254950 MARK1Q9P0L2 795 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 MAPRE3Q9UPY8 281 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 NUMBLQ9Y6R0 609 aa11.4□□□□□ -0.58
VPS4A-201ENST00000254950 C15orf38-AP3S2A0A0A6YYH1 394 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 A0A0U1RQS6 177 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 FGF3P11487 239 aaPredicted RBP11.4□□□□□ -0.59
VPS4A-201ENST00000254950 SOX11P35716 441 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 HNMTP50135 292 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 CHIT1Q13231 466 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 TGFBIQ15582 683 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 ARPINQ7Z6K5 226 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 TMIEQ8NEW7 156 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 SPACA7Q96KW9 195 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 GBP5Q96PP8 586 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 C1orf50Q9BV19 199 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 CARS2Q9HA77 564 aaKnown RBP11.4□□□□□ -0.59
VPS4A-201ENST00000254950 ITM2CQ9NQX7 267 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 CIDEBQ9UHD4 219 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 INTS6Q9UL03 887 aaKnown RBP11.4□□□□□ -0.59
VPS4A-201ENST00000254950 ZNF490Q9ULM2 529 aaPredicted RBP11.4□□□□□ -0.59
VPS4A-201ENST00000254950 COLEC10Q9Y6Z7 277 aa11.4□□□□□ -0.59
VPS4A-201ENST00000254950 PSMD11O00231 422 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 PI15O43692 258 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 ENO2P09104 434 aaPredicted RBP11.39□□□□□ -0.59
VPS4A-201ENST00000254950 CD1DP15813 335 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 GNPDA1P46926 289 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 IDH3AP50213 366 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 DNAJB13P59910 316 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 SEMA3AQ14563 771 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 ACSBG2Q5FVE4 666 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 SPATA19Q7Z5L4 167 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 ZNF683Q8IZ20 524 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 PNPLA1Q8N8W4 532 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 TRIM45Q9H8W5 580 aaPredicted RBP11.39□□□□□ -0.59
VPS4A-201ENST00000254950 A0A1W2PQU0 124 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 C5orf58C9J3I9 102 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 STX16-NPEPL1H3BU86 382 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 STX16O14662 325 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 TIMP2P16035 220 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 AMD1P17707 334 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 CR2P20023 1033 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 CCND1P24385 295 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 GMPRP36959 345 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 CDKN1CP49918 316 aaPredicted RBP11.39□□□□□ -0.59
VPS4A-201ENST00000254950 GALK1P51570 392 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 ENPP7Q6UWV6 458 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 PARS2Q7L3T8 475 aaKnown RBP11.39□□□□□ -0.59
VPS4A-201ENST00000254950 HEATR4Q86WZ0 1026 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 GPR26Q8NDV2 337 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 HM13Q8TCT9 377 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 KCNV2Q8TDN2 545 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 CCDC138Q96M89 665 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 WDR83Q9BRX9 315 aaKnown RBP11.39□□□□□ -0.59
VPS4A-201ENST00000254950 DKK3Q9UBP4 350 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 ITM2BQ9Y287 266 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 GRID2O43424 1007 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 CPSF4O95639 269 aaKnown RBP11.39□□□□□ -0.59
VPS4A-201ENST00000254950 GNAZP19086 355 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 IFNA8P32881 189 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 GPC1P35052 558 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 SOX9P48436 509 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 IL1RL1Q01638 556 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 AP5B1Q2VPB7 878 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 LSM12Q3MHD2 195 aaKnown RBP11.39□□□□□ -0.59
VPS4A-201ENST00000254950 DPPA4Q7L190 304 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 TMEM150AQ86TG1 271 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 FAM3CQ92520 227 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 C12orf66Q96MD2 445 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 AIF1LQ9BQI0 150 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 RC3H2Q9HBD1 1191 aaKnown RBP11.39□□□□□ -0.59
VPS4A-201ENST00000254950 ARL8BQ9NVJ2 186 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 MGAMO43451 1857 aa11.39□□□□□ -0.59
VPS4A-201ENST00000254950 RNF103-CHMP3A0A140T963 221 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms