RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 NKAPQ8N5F7 415 aaKnown RBP20.99■□□□□ 0.95
TRIM28-201ENST00000253024 FBXO22Q8NEZ5 403 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 NPLQ9BXD5 320 aaPredicted RBP20.99■□□□□ 0.95
TRIM28-201ENST00000253024 OLA1Q9NTK5 396 aaKnown RBP20.99■□□□□ 0.95
TRIM28-201ENST00000253024 INTS10Q9NVR2 710 aaKnown RBP20.99■□□□□ 0.95
TRIM28-201ENST00000253024 DGKBQ9Y6T7 804 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 C1orf232A0A0U1RR37 186 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 ANKRD33BA6NCL7 494 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 H3BNC9 293 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 OR7A17O14581 309 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 STC2O76061 302 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 DIRAS1O95057 198 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 NKG7Q16617 165 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 SPESP1Q6UW49 350 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 SERPINA9Q86WD7 417 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.99■□□□□ 0.95
TRIM28-201ENST00000253024 MYOCQ99972 504 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 FANCEQ9HB96 536 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 DOLKQ9UPQ8 538 aa20.99■□□□□ 0.95
TRIM28-201ENST00000253024 MATN4O95460 622 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 SEC24AO95486 1093 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 IGLV3-27P01718 113 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 CYP4B1P13584 511 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 SF1Q15637 639 aaKnown RBP20.98■□□□□ 0.95
TRIM28-201ENST00000253024 SEPT8Q92599 483 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 ASB2Q96Q27 587 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 WWOXQ9NZC7 414 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 IFT80Q9P2H3 777 aaPredicted RBP20.98■□□□□ 0.95
TRIM28-201ENST00000253024 PHF24Q9UPV7 400 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 ZNF711Q9Y462 761 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 SEC22BO75396 215 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 MTX2O75431 263 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 RASAL1O95294 804 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 GSSP48637 474 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 EMP3P54852 163 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 GPR17Q13304 367 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 USP41Q3LFD5 358 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 TMTC4Q5T4D3 741 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 PRMT9Q6P2P2 845 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 GALNT5Q7Z7M9 940 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 TRIM54Q9BYV2 358 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 MAGEH1Q9H213 219 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 PFDN4Q9NQP4 134 aa20.98■□□□□ 0.95
TRIM28-201ENST00000253024 WARS2Q9UGM6 360 aaKnown RBP20.98■□□□□ 0.95
TRIM28-201ENST00000253024 RANBP2P49792 3224 aaKnown RBP20.98■□□□□ 0.95
TRIM28-201ENST00000253024 FFAR2O15552 330 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 TTPAP49638 278 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 ABRAXAS1Q6UWZ7 409 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 TSPAN33Q86UF1 283 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 RIC8BQ9NVN3 520 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 EEDO75530 441 aaKnown RBP20.97■□□□□ 0.95
TRIM28-201ENST00000253024 CAPN15O75808 1086 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 MLYCDO95822 493 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 CD160O95971 181 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 MYCLP1P12525 358 aaPredicted RBP20.97■□□□□ 0.95
TRIM28-201ENST00000253024 GJA1P17302 382 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 MYF6P23409 242 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 CAPGP40121 348 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 LSM3P62310 102 aaKnown RBP20.97■□□□□ 0.95
TRIM28-201ENST00000253024 MEP1AQ16819 746 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 TSSK3Q96PN8 268 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 KDELR3O43731 214 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 EPOP01588 193 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 AGXTP21549 392 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 MATN1P21941 496 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 XKR7Q5GH72 579 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 SPOUT1Q5T280 376 aaKnown RBP20.97■□□□□ 0.95
TRIM28-201ENST00000253024 HECTD3Q5T447 861 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 OGFOD2Q6N063 350 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 APCDD1Q8J025 514 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 LIX1Q8N485 282 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 CGREF1Q99674 301 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 SEZ6LQ9BYH1 1024 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 CLPBQ9H078 707 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 CLEC4EQ9ULY5 219 aa20.97■□□□□ 0.95
TRIM28-201ENST00000253024 ALDH4A1P30038 563 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 ATN1P54259 1190 aaPredicted RBP20.96■□□□□ 0.95
TRIM28-201ENST00000253024 DUS1LQ6P1R4 473 aaKnown RBP20.96■□□□□ 0.95
TRIM28-201ENST00000253024 DLEU7Q6UYE1 221 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 ERI1Q8IV48 349 aaKnown RBP20.96■□□□□ 0.95
TRIM28-201ENST00000253024 PNPT1Q8TCS8 783 aaKnown RBP20.96■□□□□ 0.95
TRIM28-201ENST00000253024 ADGRE3Q9BY15 652 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 NTN4Q9HB63 628 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 CD84Q9UIB8 345 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 ZNF840PA6NDX5 716 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 E2F6O75461 281 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 MBL2P11226 248 aaPredicted RBP20.96■□□□□ 0.95
TRIM28-201ENST00000253024 PIGAP37287 484 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 CSKP41240 450 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 CDH4P55283 916 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 SMAD3P84022 425 aaKnown RBP20.96■□□□□ 0.95
TRIM28-201ENST00000253024 SPATA19Q7Z5L4 167 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 HID1Q8IV36 788 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 ZC3H7AQ8IWR0 971 aaKnown RBP20.96■□□□□ 0.95
TRIM28-201ENST00000253024 FAM162AQ96A26 154 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 TTPALQ9BTX7 342 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 LRRC3Q9BY71 257 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 STARD7Q9NQZ5 370 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 ADGRE2Q9UHX3 823 aa20.96■□□□□ 0.95
TRIM28-201ENST00000253024 PIKFYVEQ9Y2I7 2098 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms