RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 SYCE1LA8MT33 242 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 GUCA1CO95843 209 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 PFKLP17858 780 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 GDF5P43026 501 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 KCNQ1P51787 676 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 ZNF140P52738 457 aaPredicted RBP13.83□□□□□ -0.2
USH1C-201ENST00000005226 IL1RL1Q01638 556 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 SKIV2LQ15477 1246 aaKnown RBP13.83□□□□□ -0.2
USH1C-201ENST00000005226 TRIM16LQ309B1 348 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 CTSL3PQ5NE16 218 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 GALNT5Q7Z7M9 940 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 ZNF280BQ86YH2 543 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 LPCAT1Q8NF37 534 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 OR4F6Q8NGB9 312 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 NRBF2Q96F24 287 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 AURKBQ96GD4 344 aaPredicted RBP13.83□□□□□ -0.2
USH1C-201ENST00000005226 SH3YL1Q96HL8 342 aaPredicted RBP13.83□□□□□ -0.2
USH1C-201ENST00000005226 NUSAP1Q9BXS6 441 aaKnown RBP13.83□□□□□ -0.2
USH1C-201ENST00000005226 ZFP14Q9HCL3 533 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 SACM1LQ9NTJ5 587 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 COMMD10Q9Y6G5 202 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 DOCK4Q8N1I0 1966 aa13.83□□□□□ -0.2
USH1C-201ENST00000005226 KRBA1A5PL33 1030 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 ARVCFO00192 962 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 MLYCDO95822 493 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 B3GALT4O96024 378 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 GSTM2P28161 218 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 HALP42357 657 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 MAP2K4P45985 399 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 GP2P55259 537 aaKnown RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 HMGCS1Q01581 520 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 IFITM3Q01628 133 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 CBX2Q14781 532 aaPredicted RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 NADSYN1Q6IA69 706 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 NCCRP1Q6ZVX7 275 aaPredicted RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 C10orf111Q8N326 155 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 KRTCAP2Q8N6L1 136 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 OR2T12Q8NG77 320 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 PNPT1Q8TCS8 783 aaKnown RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 ZFP90Q8TF47 636 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 TAMM41Q96BW9 452 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 ADAM2Q99965 735 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 TDRD1Q9BXT4 1180 aaKnown RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 GPN2Q9H9Y4 310 aaPredicted RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 SLC6A13Q9NSD5 602 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 NLE1Q9NVX2 485 aaPredicted RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 COMMD8Q9NX08 183 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 SMPD4Q9NXE4 827 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 TRMT6Q9UJA5 497 aaKnown RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 PRAMEF11O60813 436 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 PRSS23O95084 383 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 NDST3O95803 873 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 CYP4B1P13584 511 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 PKMP14618 531 aaKnown RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 RPL38P63173 70 aaKnown RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 GSTM4Q03013 218 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 MAPRE1Q15691 268 aaKnown RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 TAS2R42Q7RTR8 314 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 MILR1Q7Z6M3 343 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 ATP6V0D2Q8N8Y2 350 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 CD200R1Q8TD46 325 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 GTF3C2Q8WUA4 911 aaPredicted RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 SLC47A1Q96FL8 570 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 TRIB3Q96RU7 358 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 BARD1Q99728 777 aaKnown RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 RHNO1Q9BSD3 238 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 OSBPL10Q9BXB5 764 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 ACTR8Q9H981 624 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 MARCH2Q9P0N8 246 aa13.82□□□□□ -0.2
USH1C-201ENST00000005226 PRG3Q9Y2Y8 225 aaPredicted RBP13.82□□□□□ -0.2
USH1C-201ENST00000005226 LSM1O15116 133 aaKnown RBP13.81□□□□□ -0.2
USH1C-201ENST00000005226 TBC1D4O60343 1298 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 GMNNO75496 209 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 GSNP06396 782 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 BMP1P13497 986 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 MC4RP32245 332 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 THPOP40225 353 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 EIF2B2P49770 351 aaKnown RBP13.81□□□□□ -0.2
USH1C-201ENST00000005226 IL2P60568 153 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 GRIK2Q13002 908 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 TUSC3Q13454 348 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 DNASE1L3Q13609 305 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 PWP1Q13610 501 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 SPIDRQ14159 915 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 FXNQ16595 210 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 FAM174BQ3ZCQ3 159 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 SPATS1Q496A3 300 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 GNASQ5JWF2 1037 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 NIPAL1Q6NVV3 410 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 LGI2Q8N0V4 545 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 LEMD2Q8NC56 503 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 ZNF555Q8NEP9 628 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 HDAC2Q92769 488 aaKnown RBP13.81□□□□□ -0.2
USH1C-201ENST00000005226 FAM162AQ96A26 154 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 MTFMTQ96DP5 389 aaKnown RBP13.81□□□□□ -0.2
USH1C-201ENST00000005226 ALPK1Q96QP1 1244 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 SCML2Q9UQR0 700 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 NOD1Q9Y239 953 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 TRIM17Q9Y577 477 aa13.81□□□□□ -0.2
USH1C-201ENST00000005226 COL4A4P53420 1690 aaPredicted RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms