RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 UNC50Q53HI1 259 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 GPR107Q5VW38 600 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 BLOC1S3Q6QNY0 202 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 KDELC1Q6UW63 502 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 AGMOQ6ZNB7 445 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 PAQR9Q6ZVX9 377 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ADAMTSL2Q86TH1 951 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ARHGAP12Q8IWW6 846 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 TP53INP2Q8IXH6 220 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 KIAA2013Q8IYS2 634 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SLC7A5P1Q8MH63 180 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 FNDC5Q8NAU1 212 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 C12orf43Q96C57 262 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SLC39A13Q96H72 371 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF419Q96HQ0 510 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 FUBP3Q96I24 572 aaKnown RBP eCLIP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 UBXN10Q96LJ8 280 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 RPRD1AQ96P16 312 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 BCL7BQ9BQE9 202 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 AARSD1Q9BTE6 412 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ADGRE3Q9BY15 652 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ASPSCR1Q9BZE9 553 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 RMND5AQ9H871 391 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 C3orf18Q9UK00 162 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CDH7Q9ULB5 785 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SNX10Q9Y5X0 201 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 DOCK3Q8IZD9 2030 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 MYO18AQ92614 2054 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 A0A1B0GVG6 124 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ATP6AP2A0A1C7CYW4 349 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CCDC162PA2VCL2 907 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SLC28A1O00337 649 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 BTN3A1O00481 513 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 FBP2O00757 339 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 RAD51BO15315 384 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 STX7O15400 261 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ATP6AP2O75787 350 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SNAI1O95863 264 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 S1PR4O95977 384 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CYP11A1P05108 521 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 FYNP06241 537 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CA3P07451 260 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 LINC00032P0C843 101 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SPATA31D3P0C874 917 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CD1DP15813 335 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 YWHAQP27348 245 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 GMPRP36959 345 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 MRPL19P49406 292 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SLC5A3P53794 718 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 GABARAPL2P60520 117 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 TUSC3Q13454 348 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 IL18R1Q13478 541 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 DAG1Q14118 895 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 NEDD8Q15843 81 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 NHSL2Q5HYW2 709 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 DENND5AQ6IQ26 1287 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 GLB1LQ6UWU2 654 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ISLR2Q6UXK2 745 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SPATA31D4Q6ZUB0 917 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CCDC149Q6ZUS6 474 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 KCTD8Q6ZWB6 473 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SPRED1Q7Z699 444 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 HID1Q8IV36 788 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 TMEM151BQ8IW70 566 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 FAM126BQ8IXS8 530 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SLC15A3Q8IY34 581 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 KIAA1958Q8N8K9 716 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 GLB1L3Q8NCI6 653 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SMG8Q8ND04 991 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ACVR1CQ8NER5 493 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 OR52K2Q8NGK3 314 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ULK4Q96C45 1275 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ITPKCQ96DU7 683 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 RBM4BQ9BQ04 359 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 RBM4Q9BWF3 364 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 EMILIN2Q9BXX0 1053 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 MRPL9Q9BYD2 267 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CCNB1IP1Q9NPC3 277 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 ACSS2Q9NR19 701 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 TLR8Q9NR97 1041 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 AIG1Q9NVV5 245 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 TMEM248Q9NWD8 314 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 EGFL7Q9UHF1 273 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 OAZ3Q9UMX2 235 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CRYL1Q9Y2S2 319 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 TPRKBQ9Y3C4 175 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 RNF11Q9Y3C5 154 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 PCDHB5Q9Y5E4 795 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SLC30A1Q9Y6M5 507 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 C7orf72A4D263 438 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 M0R3G1 203 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SOCS2O14508 198 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 EI24O14681 340 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 RGS14O43566 566 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 SCELO95171 688 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 OTCP00480 354 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 GOT2P00505 430 aaKnown RBP3.93□□□□□ -1.78
SCN1A-214ENST00000637038 DCKP27707 260 aa3.93□□□□□ -1.78
SCN1A-214ENST00000637038 CHRNA4P43681 627 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms