RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 RPS17P08708 135 aaKnown RBP16.58■□□□□ 0.24
CLN3-252ENST00000636907 ENO3P13929 434 aaPredicted RBP16.58■□□□□ 0.24
CLN3-252ENST00000636907 GLULP15104 373 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 PRLHRP49683 370 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 HK2P52789 917 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 CDH13P55290 713 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 HSPA14Q0VDF9 509 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 SLC9B1Q4ZJI4 515 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 PLEKHS1Q5SXH7 462 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 SEL1L3Q68CR1 1132 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 EPGNQ6UW88 154 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 PLA2G15Q8NCC3 412 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 GANCQ8TET4 914 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 DLG3Q92796 817 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 FAM131CQ96AQ9 280 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 NSUN5Q96P11 429 aaKnown RBP16.58■□□□□ 0.24
CLN3-252ENST00000636907 RRP15Q9Y3B9 282 aaKnown RBP16.58■□□□□ 0.24
CLN3-252ENST00000636907 OARD1Q9Y530 152 aa16.58■□□□□ 0.24
CLN3-252ENST00000636907 TMEM202A6NGA9 273 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 FCHO1O14526 889 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 HDAC3O15379 428 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 NUAK1O60285 661 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 FOSL2P15408 326 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 CD72P21854 359 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 BNIP1Q12981 228 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 PHKG1Q16816 387 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 SLC44A4Q53GD3 710 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 ANKS6Q68DC2 871 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 TMEM220Q6QAJ8 160 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 CLNKQ7Z7G1 428 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 ADGRG6Q86SQ4 1221 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 VRK3Q8IV63 474 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 RPLP0P6Q8NHW5 317 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 FAM3CQ92520 227 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 C1QTNF3Q9BXJ4 246 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 NMUR2Q9GZQ4 415 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 SLC2A4RGQ9NR83 387 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 SLC12A4Q9UP95 1085 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 ZFR2Q9UPR6 939 aaKnown RBP16.57■□□□□ 0.24
CLN3-252ENST00000636907 CDYLQ9Y232 598 aa16.57■□□□□ 0.24
CLN3-252ENST00000636907 SLCO1B7G3V0H7 640 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 PPP6CO00743 305 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 KPNA5O15131 536 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 RAD51BO15315 384 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 FFAR2O15552 330 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 PLRG1O43660 514 aaKnown RBP16.56■□□□□ 0.24
CLN3-252ENST00000636907 ATG13O75143 517 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 SRFP11831 508 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 SCTRP47872 440 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 TDGQ13569 410 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 CCINQ13939 588 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 LEXMQ3ZCV2 418 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 PDPRQ8NCN5 879 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 ESAMQ96AP7 390 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 MSANTD3Q96H12 275 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 GUCD1Q96NT3 240 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 OR2AG1Q9H205 316 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 FAM8A1Q9UBU6 413 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 VTI1BQ9UEU0 232 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 APOBEC2Q9Y235 224 aaKnown RBP16.56■□□□□ 0.24
CLN3-252ENST00000636907 FIS1Q9Y3D6 152 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 ASB1Q9Y576 335 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 MYO10Q9HD67 2058 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 GPC4O75487 556 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 CDK14O94921 469 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 PCCBP05166 539 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 JUNP05412 331 aaKnown RBP16.56■□□□□ 0.24
CLN3-252ENST00000636907 MPC1LP0DKB6 136 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 CLCQ05315 142 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 AGERQ15109 404 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 PDCD2Q16342 344 aaPredicted RBP16.56■□□□□ 0.24
CLN3-252ENST00000636907 WSCD2Q2TBF2 565 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 C18orf21Q32NC0 220 aaPredicted RBP16.56■□□□□ 0.24
CLN3-252ENST00000636907 FBXO43Q4G163 708 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 PTCRAQ6ISU1 281 aaPredicted RBP16.56■□□□□ 0.24
CLN3-252ENST00000636907 PNCKQ6P2M8 343 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 TMEM92Q6UXU6 159 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 ADAMTSL4Q6UY14 1074 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 OR14C36Q8NHC7 312 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 TRPC4APQ8TEL6 797 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 ZNF483Q8TF39 744 aaPredicted RBP16.56■□□□□ 0.24
CLN3-252ENST00000636907 ASZ1Q8WWH4 475 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 PPP1R36Q96LQ0 422 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 LENG8Q96PV6 779 aaPredicted RBP16.56■□□□□ 0.24
CLN3-252ENST00000636907 ASB2Q96Q27 587 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 CCM2Q9BSQ5 444 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 NUF2Q9BZD4 464 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 ZCCHC2Q9C0B9 1178 aaKnown RBP16.56■□□□□ 0.24
CLN3-252ENST00000636907 EPHX3Q9H6B9 360 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 TRIM39Q9HCM9 518 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 ATXN10Q9UBB4 475 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 PCTPQ9UKL6 214 aa16.56■□□□□ 0.24
CLN3-252ENST00000636907 PRR23AA6NEV1 266 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 LILRB5O75023 590 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 GUCA1CO95843 209 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 S100BP04271 92 aaPredicted RBP16.55■□□□□ 0.24
CLN3-252ENST00000636907 IL9P15248 144 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 SH3BP2P78314 561 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 BCL7AQ4VC05 210 aa16.55■□□□□ 0.24
CLN3-252ENST00000636907 SPDYAQ5MJ70 313 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms