RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 KIR3DL1P43629 444 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 TDGF1P3P51864 188 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 KPNA2P52292 529 aaKnown RBP14.15□□□□□ -0.14
CLN3-249ENST00000636685 ART1P52961 327 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 TLE4Q04727 773 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 ITKQ08881 620 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 DPYSQ14117 519 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 RPE65Q16518 533 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 MAN2A1Q16706 1144 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 ERMARDQ5T6L9 678 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 MARC1Q5VT66 337 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 ALS2CLQ60I27 953 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 ZNF385CQ66K41 422 aaPredicted RBP14.15□□□□□ -0.14
CLN3-249ENST00000636685 IGFL2Q6UWQ7 119 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 RPTNQ6XPR3 784 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 PPP1R32Q7Z5V6 425 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 PHF13Q86YI8 300 aaPredicted RBP14.15□□□□□ -0.14
CLN3-249ENST00000636685 LPCAT1Q8NF37 534 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 C14orf79Q96F83 325 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 DHRS4Q9BTZ2 278 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 SLC7A5P2Q9GIP4 190 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 ETNK2Q9NVF9 386 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 CWC15Q9P013 229 aaKnown RBP14.15□□□□□ -0.14
CLN3-249ENST00000636685 RWDD2AQ9UIY3 292 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 SH3BGRL2Q9UJC5 107 aa14.15□□□□□ -0.14
CLN3-249ENST00000636685 GOLGA6L4A6NEF3 574 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 SLC9B1P1A6NJY1 282 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 EIF3CLB5ME19 914 aaKnown RBP14.14□□□□□ -0.15
CLN3-249ENST00000636685 DRD2P14416 443 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 AGXTP21549 392 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 ANP32AP39687 249 aaKnown RBP14.14□□□□□ -0.15
CLN3-249ENST00000636685 FOLR3P41439 243 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 HALP42357 657 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 ASIC2Q16515 512 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 CLEC16AQ2KHT3 1053 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 KHDC1Q4VXA5 237 aaKnown RBP14.14□□□□□ -0.15
CLN3-249ENST00000636685 PPP1R15BQ5SWA1 713 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 ZNF324BQ6AW86 544 aaPredicted RBP14.14□□□□□ -0.15
CLN3-249ENST00000636685 FCRL6Q6DN72 434 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 C11orf96Q7Z7L8 435 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 COG1Q8WTW3 980 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 NSMCE1Q8WV22 266 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 GLYATL1Q969I3 302 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 AGAP3Q96P47 875 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 LYSMD1Q96S90 227 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 EIF3CQ99613 913 aaKnown RBP14.14□□□□□ -0.15
CLN3-249ENST00000636685 TDRD1Q9BXT4 1180 aaKnown RBP14.14□□□□□ -0.15
CLN3-249ENST00000636685 NDST4Q9H3R1 872 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 MCCC2Q9HCC0 563 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 PSMD13Q9UNM6 376 aa14.14□□□□□ -0.15
CLN3-249ENST00000636685 RGSL1A5PLK6 1076 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 OR6C74A6NCV1 312 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 ATMINO43313 823 aaPredicted RBP14.13□□□□□ -0.15
CLN3-249ENST00000636685 ZNF749O43361 778 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 CBSLP0DN79 551 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 AMPD1P23109 780 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 CBSP35520 551 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 PBX1P40424 430 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 DSC2Q02487 901 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 ADCY2Q08462 1091 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 Q0VFX4 171 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 AIMP2Q13155 320 aaKnown RBP14.13□□□□□ -0.15
CLN3-249ENST00000636685 PRKD1Q15139 912 aaPredicted RBP14.13□□□□□ -0.15
CLN3-249ENST00000636685 TLR1Q15399 786 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 CDSNQ15517 529 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 CYP2A13Q16696 494 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 VWA3BQ502W6 1294 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 ANKRD20A8PQ5CZ79 823 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 DCUN1D2Q6PH85 259 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 GFRALQ6UXV0 394 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 B4GALNT4Q76KP1 1039 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 MON1BQ7L1V2 547 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 OOSP2Q86WS3 158 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 CEP97Q8IW35 865 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 ELOA2Q8IYF1 753 aaPredicted RBP14.13□□□□□ -0.15
CLN3-249ENST00000636685 ATPAF2Q8N5M1 289 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 GPR26Q8NDV2 337 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 CATSPER1Q8NEC5 780 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 CCHCR1Q8TD31 782 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 CHTF18Q8WVB6 975 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 EID2BQ96D98 161 aa14.13□□□□□ -0.15
CLN3-249ENST00000636685 MAGEB10Q96LZ2 347 aaPredicted RBP14.13□□□□□ -0.15
CLN3-249ENST00000636685 DPH2Q9BQC3 489 aaPredicted RBP14.13□□□□□ -0.15
CLN3-249ENST00000636685 ABCA4P78363 2273 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 CNOT3O75175 753 aaKnown RBP14.12□□□□□ -0.15
CLN3-249ENST00000636685 FAM155BO75949 473 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 CDK14O94921 469 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 PRKCSHP14314 528 aaPredicted RBP14.12□□□□□ -0.15
CLN3-249ENST00000636685 CA7P43166 264 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 PREPP48147 710 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 HCAR3P49019 387 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 CDH6P55285 790 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 ADORA2A-AS1P86434 159 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 ZFYVE27Q5T4F4 411 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 C1orf189Q5VU69 101 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 AGAP7PQ5VUJ5 663 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 ARMC6Q6NXE6 501 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 MTFR2Q6P444 385 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 XKRXQ6PP77 449 aa14.12□□□□□ -0.15
CLN3-249ENST00000636685 CYP4V2Q6ZWL3 525 aaPredicted RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms