RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 FAM234BA2RU67 622 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 TMEM221A6NGB7 291 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 MITFO75030 526 aaPredicted RBP10.9□□□□□ -0.66
CLN3-244ENST00000636147 CYP11A1P05108 521 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 HSD17B1P14061 328 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 IDUAP35475 653 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 ATP6V1E1P36543 226 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 MTA1Q13330 715 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 INTS6LQ5JSJ4 861 aaKnown RBP10.9□□□□□ -0.66
CLN3-244ENST00000636147 ELMSAN1Q6PJG2 1045 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 BLOC1S3Q6QNY0 202 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 CYP20A1Q6UW02 462 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 ENPP6Q6UWR7 440 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 MOB2Q70IA6 237 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 LARP4Q71RC2 724 aaKnown RBP eCLIP10.9□□□□□ -0.661e-6■□□□□ 8.2
CLN3-244ENST00000636147 BTLAQ7Z6A9 289 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 RASAL3Q86YV0 1011 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 EPHX4Q8IUS5 362 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 CAMKK1Q8N5S9 505 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 KBTBD8Q8NFY9 601 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 SLC13A3Q8WWT9 602 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 HDAC2Q92769 488 aaKnown RBP10.9□□□□□ -0.66
CLN3-244ENST00000636147 PHF21AQ96BD5 680 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 LGALS12Q96DT0 336 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 NEURL2Q9BR09 285 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 COPS4Q9BT78 406 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 GSTO2Q9H4Y5 243 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 IPPKQ9H8X2 491 aa10.9□□□□□ -0.66
CLN3-244ENST00000636147 NUP214P35658 2090 aaPredicted RBP10.9□□□□□ -0.66
CLN3-244ENST00000636147 ZNF487B1APH4 448 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 SLC7A4O43246 635 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 NBNO60934 754 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 NIPSNAP2O75323 286 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 DGKEP52429 567 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 OR2B6P58173 313 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 MXD1Q05195 221 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 ATAD3BQ5T9A4 648 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 PLEKHG7Q6ZR37 379 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 ISCA2Q86U28 154 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 CILP2Q8IUL8 1156 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 CADM3Q8N126 398 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 ATP6V0D2Q8N8Y2 350 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 SIDT2Q8NBJ9 832 aaKnown RBP10.9□□□□□ -0.67
CLN3-244ENST00000636147 ENKURQ8TC29 256 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 PTCD2Q8WV60 388 aaKnown RBP10.9□□□□□ -0.67
CLN3-244ENST00000636147 HMCESQ96FZ2 354 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 TDRD1Q9BXT4 1180 aaKnown RBP10.9□□□□□ -0.67
CLN3-244ENST00000636147 BEX2Q9BXY8 128 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 VRTNQ9H8Y1 702 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 IGSF5Q9NSI5 407 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 C14orf119Q9NWQ9 140 aa10.9□□□□□ -0.67
CLN3-244ENST00000636147 ILVBLA1L0T0 632 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 H0YAE9 185 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 RFXANKO14593 260 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 LZTS3O60299 673 aaPredicted RBP10.89□□□□□ -0.67
CLN3-244ENST00000636147 TMCC2O75069 709 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 KRT6AP02538 564 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 MT-ND2P03891 347 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 KRT6BP04259 564 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 OR4Q2P0C623 313 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 POU2F1P14859 743 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 PAX3P23760 479 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 KRT6CP48668 564 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 PTGR1Q14914 329 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 SF3B4Q15427 424 aaKnown RBP eCLIP10.89□□□□□ -0.672e-7■■■■□ 24.8
CLN3-244ENST00000636147 FAM187BQ17R55 369 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 PLA2G4EQ3MJ16 856 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 TPRG1LQ5T0D9 272 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 TBPL2Q6SJ96 375 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 MAMDC4Q6UXC1 1216 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 COLGALT2Q8IYK4 626 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 LGI2Q8N0V4 545 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 PPP3R2Q96LZ3 170 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 MAF1Q9H063 256 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 TBC1D14Q9P2M4 693 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 RAPGEFL1Q9UHV5 662 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 MOSPD1Q9UJG1 213 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 ERVK-11Q9UQG0 969 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 VPS9D1Q9Y2B5 631 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 TBKBP1A7MCY6 615 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 E9PAM4 449 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 SLC1A7O00341 560 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 CHRNA1P02708 482 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 PRSS56P0CW18 603 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 PRDX3P30048 256 aaKnown RBP10.89□□□□□ -0.67
CLN3-244ENST00000636147 SOAT1P35610 550 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 PPP3CCP48454 512 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 CDC42EP1Q00587 391 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 FAM117BQ6P1L5 589 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 DTWD1Q8N5C7 304 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 AADATQ8N5Z0 425 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 RPL3LQ92901 407 aaKnown RBP10.89□□□□□ -0.67
CLN3-244ENST00000636147 FBXO32Q969P5 355 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 NTAN1Q96AB6 310 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 TMEM125Q96AQ2 219 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 KLRG1Q96E93 195 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 C12orf42Q96LP6 360 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 PANX1Q96RD7 426 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 C1QTNF1Q9BXJ1 281 aa10.89□□□□□ -0.67
CLN3-244ENST00000636147 PAK1IP1Q9NWT1 392 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms