RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ECHS1P30084 290 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 SSTR1P30872 391 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 FMO4P31512 558 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 ADARP55265 1226 aaKnown RBP18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 BIRC2Q13490 618 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 NFE2L1Q14494 772 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 SYTL3Q4VX76 610 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 C3orf62Q6ZUJ4 267 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 CFAP206Q8IYR0 622 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 C2CD4AQ8NCU7 369 aaPredicted RBP18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 ELMO1Q92556 727 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 CDKL2Q92772 493 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 P2RY12Q9H244 342 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 PRDM8Q9NQV8 689 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 NSMCE4AQ9NXX6 385 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 MOCS1Q9NZB8 636 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 ACSL5Q9ULC5 683 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 PADI4Q9UM07 663 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 CRYL1Q9Y2S2 319 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 BPTFQ12830 3046 aa18.76■□□□□ 0.59
SQSTM1-216ENST00000626660 KIR2DS5A0A0G2JLQ3 304 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 A0A0G2JNG1 304 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 DCDC2BA2VCK2 349 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 PRR19A6NJB7 356 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 KIR2DS3K7RE56 304 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 NOBOXO60393 691 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 TRIM16O95361 564 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 CKMT1AP12532 417 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 KCNA4P22459 653 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 HALP42357 657 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 LEPRP48357 1165 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 MPP1Q00013 466 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 KIR2DS5Q14953 304 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 SLMAPQ14BN4 828 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 TMED2Q15363 201 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 SEPT7Q16181 437 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 C14orf28Q4W4Y0 310 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 TEDDM1Q5T9Z0 273 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 AGAP9Q5VTM2 703 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 METRNLQ641Q3 311 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 WASH2PQ6VEQ5 465 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 FAM83HQ6ZRV2 1179 aaPredicted RBP18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 GLRX5Q86SX6 157 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 RELL1Q8IUW5 271 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 EIF1ADQ8N9N8 165 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 AVL9Q8NBF6 648 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 GPR156Q8NFN8 814 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 OR6C4Q8NGE1 309 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 UBXN4Q92575 508 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 NAT6Q93015 286 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 STN1Q9H668 368 aaKnown RBP18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 WASH6PQ9NQA3 447 aa18.75■□□□□ 0.59
SQSTM1-216ENST00000626660 CPED1A4D0V7 1026 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 LIN7AO14910 233 aaPredicted RBP18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 KCNK5O95279 499 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 SLC35G4P0C7Q5 338 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 PKMP14618 531 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 ITGB6P18564 788 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 RPL10P27635 214 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 STX2P32856 288 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 PHBP35232 272 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 GPX6P59796 221 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 SIM1P81133 766 aaPredicted RBP18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 PLOD1Q02809 727 aaPredicted RBP18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 RPA4Q13156 261 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 BOP1Q14137 746 aaKnown RBP18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 ZNF789Q5FWF6 425 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 IYDQ6PHW0 289 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 ABRAXAS1Q6UWZ7 409 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 CYS1Q717R9 158 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 GALNT7Q86SF2 657 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 NAGSQ8N159 534 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 MAPK15Q8TD08 544 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 CNTNAP3BQ96NU0 1288 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 BIRC8Q96P09 236 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 CNTNAP3Q9BZ76 1288 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 COG4Q9H9E3 785 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 LRRC4CQ9HCJ2 640 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 COMMD10Q9Y6G5 202 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 ASXL3Q9C0F0 2248 aa18.74■□□□□ 0.59
SQSTM1-216ENST00000626660 CACNA1AO00555 2505 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 TRBV23OR9-2A0A075B6M9 112 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 LY6G6EA0A0G2JKS1 128 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 TCRBV9S1A1TA0A576 114 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 A6NCN8 305 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 E5RI56 91 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 KPNA5O15131 536 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 HAUS5O94927 633 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 EML2O95834 649 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 APOA4P06727 396 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 MYF5P13349 255 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 ACP1P24666 158 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 TNFRSF8P28908 595 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 CD151P48509 253 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 MAZP56270 477 aaKnown RBP18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 DNAJC3Q13217 504 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 KYNUQ16719 465 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 CTSL3PQ5NE16 218 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 CNSTQ6PJW8 725 aa18.73■□□□□ 0.59
SQSTM1-216ENST00000626660 SLC9B2Q86UD5 537 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms