RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 TRIM39Q9HCM9 518 aa13.52□□□□□ -0.25
SNX1-214ENST00000625244 HRASLS2Q9NWW9 162 aa13.52□□□□□ -0.25
SNX1-214ENST00000625244 FHOD1Q9Y613 1164 aa13.52□□□□□ -0.25
SNX1-214ENST00000625244 DOCK10Q96BY6 2186 aa13.52□□□□□ -0.25
SNX1-214ENST00000625244 FBN1P35555 2871 aaKnown RBP13.52□□□□□ -0.25
SNX1-214ENST00000625244 CCDC88CQ9P219 2028 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 TMEM150CB9EJG8 249 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 KMOO15229 486 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 DAPK3O43293 454 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 ALOX12BO75342 701 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 SLC25A14O95258 325 aaPredicted RBP13.51□□□□□ -0.25
SNX1-214ENST00000625244 ATXN8OSP0DMR3 200 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 IDSP22304 550 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 FOLR3P41439 243 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 EPHB1P54762 984 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 AIMP2Q13155 320 aaKnown RBP13.51□□□□□ -0.25
SNX1-214ENST00000625244 AGAP7PQ5VUJ5 663 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 RPUSD3Q6P087 351 aaKnown RBP13.51□□□□□ -0.25
SNX1-214ENST00000625244 SASS6Q6UVJ0 657 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 TMEM207Q6UWW9 146 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 RFX8Q6ZV50 586 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 LRRTM4Q86VH4 590 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 RAVER1Q8IY67 606 aaKnown RBP13.51□□□□□ -0.25
SNX1-214ENST00000625244 MLKLQ8NB16 471 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 NR4A3Q92570 626 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 MAGEB10Q96LZ2 347 aaPredicted RBP13.51□□□□□ -0.25
SNX1-214ENST00000625244 AGAP4Q96P64 663 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 KCTD15Q96SI1 283 aaPredicted RBP13.51□□□□□ -0.25
SNX1-214ENST00000625244 DPH2Q9BQC3 489 aaPredicted RBP13.51□□□□□ -0.25
SNX1-214ENST00000625244 TIMM29Q9BSF4 260 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 DHX35Q9H5Z1 703 aaKnown RBP13.51□□□□□ -0.25
SNX1-214ENST00000625244 FANCEQ9HB96 536 aa13.51□□□□□ -0.25
SNX1-214ENST00000625244 GPR89AB7ZAQ6 455 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 BHMG1C9JSJ3 638 aaPredicted RBP13.5□□□□□ -0.25
SNX1-214ENST00000625244 CNOT3O75175 753 aaKnown RBP13.5□□□□□ -0.25
SNX1-214ENST00000625244 UNC5CO95185 931 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 GPR89BP0CG08 455 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 CHRNB2P17787 502 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 KLK2P20151 261 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 AGAP20933 346 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 AGXTP21549 392 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 KPNA2P52292 529 aaKnown RBP13.5□□□□□ -0.25
SNX1-214ENST00000625244 FMO1Q01740 532 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 SRSF11Q05519 484 aaKnown RBP13.5□□□□□ -0.25
SNX1-214ENST00000625244 ADCY2Q08462 1091 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 CYP2A13Q16696 494 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 RALGPS1Q5JS13 557 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 CAVIN1Q6NZI2 390 aaKnown RBP13.5□□□□□ -0.25
SNX1-214ENST00000625244 B4GALNT4Q76KP1 1039 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 TRIM56Q9BRZ2 755 aaKnown RBP13.5□□□□□ -0.25
SNX1-214ENST00000625244 SLC7A5P2Q9GIP4 190 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 NOCTQ9UK39 431 aaKnown RBP13.5□□□□□ -0.25
SNX1-214ENST00000625244 AP4E1Q9UPM8 1137 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 CHKBQ9Y259 395 aa13.5□□□□□ -0.25
SNX1-214ENST00000625244 NCOA6Q14686 2063 aaPredicted RBP13.49□□□□□ -0.25
SNX1-214ENST00000625244 AKAP6Q13023 2319 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 C1orf232A0A0U1RR37 186 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 SLC9B1P1A6NJY1 282 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 SIGLEC16A6NMB1 481 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 AGPSO00116 658 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 ZNF749O43361 778 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 MAFKO60675 156 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 MTX2O75431 263 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 FGFR1OPO95684 399 aaKnown RBP13.49□□□□□ -0.25
SNX1-214ENST00000625244 UMODP07911 640 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 CBSLP0DN79 551 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 CBSP35520 551 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 GSCP56915 257 aaPredicted RBP13.49□□□□□ -0.25
SNX1-214ENST00000625244 RPL7AP62424 266 aaKnown RBP13.49□□□□□ -0.25
SNX1-214ENST00000625244 CSNK1G2P78368 415 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 RPE65Q16518 533 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 ZFYVE27Q5T4F4 411 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 PRAMEF13Q5VWM6 474 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 C11orf96Q7Z7L8 435 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 ACBD4Q8NC06 268 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 C3orf20Q8ND61 904 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 OR1N1Q8NGS0 311 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 OR2Y1Q8NGV0 311 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 NAA15Q9BXJ9 866 aaKnown RBP13.49□□□□□ -0.25
SNX1-214ENST00000625244 ENKD1Q9H0I2 346 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 VPS16Q9H269 839 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 SLC6A20Q9NP91 592 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 FBXL4Q9UKA2 621 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 DNPEPQ9ULA0 475 aa13.49□□□□□ -0.25
SNX1-214ENST00000625244 CLDN14O95500 239 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 PRLP01236 227 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 HALP42357 657 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 MMP13P45452 471 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 OGDHQ02218 1023 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 TPD52L1Q16890 204 aaPredicted RBP13.48□□□□□ -0.25
SNX1-214ENST00000625244 KHDC1Q4VXA5 237 aaKnown RBP13.48□□□□□ -0.25
SNX1-214ENST00000625244 ZNF569Q5MCW4 686 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 OOSP2Q86WS3 158 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 BBS5Q8N3I7 341 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 PTERQ96BW5 349 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 MCEEQ96PE7 176 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 LYSMD1Q96S90 227 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 CNPY3Q9BT09 278 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 TMEM121Q9BTD3 319 aa13.48□□□□□ -0.25
SNX1-214ENST00000625244 SPATA16Q9BXB7 569 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms