RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 ESR1P03372 595 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 NDUFS1P28331 727 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 ARFIP1P53367 373 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 GKN2Q86XP6 184 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 CPSF7Q8N684 471 aaKnown RBP11.24□□□□□ -0.61
CLIP1-219ENST00000620786 DCBLD1Q8N8Z6 715 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF483Q8TF39 744 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-219ENST00000620786 MFSD3Q96ES6 412 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 CYP2S1Q96SQ9 504 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 RNF39Q9H2S5 420 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 EPB41L1Q9H4G0 881 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 SLC35C2Q9NQQ7 365 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 G3V2T6 193 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 TIPRLO75663 272 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 CHRNGP07510 517 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 OC90Q02509 493 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-219ENST00000620786 SLC44A4Q53GD3 710 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 KRT74Q7RTS7 529 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 SAPCD2Q86UD0 394 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF366Q8N895 744 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 POP5Q969H6 163 aaKnown RBP11.24□□□□□ -0.61
CLIP1-219ENST00000620786 HMGXB4Q9UGU5 601 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 TLL2Q9Y6L7 1015 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 TMCC2O75069 709 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 RYKP34925 604 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 PTPN5P54829 565 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 SRP54P61011 504 aaKnown RBP11.24□□□□□ -0.61
CLIP1-219ENST00000620786 PPM1JQ5JR12 505 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 CLEC6AQ6EIG7 209 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 ERICH5Q6P6B1 374 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 FAM46DQ8NEK8 389 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 CPT1BQ92523 772 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 INSL5Q9Y5Q6 135 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-219ENST00000620786 LIN7AO14910 233 aaPredicted RBP11.24□□□□□ -0.61
CLIP1-219ENST00000620786 IDH3BO43837 385 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 WFS1O76024 890 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 UROSP10746 265 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 COL6A1P12109 1028 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 CD247P20963 164 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 SLC7A2P52569 658 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 IL23RQ5VWK5 629 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 DAW1Q8N136 415 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 TRPV3Q8NET8 790 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 RELTQ969Z4 430 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 SLC22A18Q96BI1 424 aa11.24□□□□□ -0.61
CLIP1-219ENST00000620786 EIF2B4Q9UI10 523 aaKnown RBP11.24□□□□□ -0.61
CLIP1-219ENST00000620786 LTN1O94822 1766 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 PLGP00747 810 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-219ENST00000620786 HSD17B2P37059 387 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 NRG3P56975 720 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 SLC8B1Q6J4K2 584 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 COX18Q8N8Q8 333 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 IRF7Q92985 503 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 GINS4Q9BRT9 223 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 INTS10Q9NVR2 710 aaKnown RBP11.23□□□□□ -0.61
CLIP1-219ENST00000620786 RHBDL2Q9NX52 303 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 LTBP3Q9NS15 1303 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 A8MUA0 341 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 ALPIP09923 528 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 NUDT17P0C025 328 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 VIPR1P32241 457 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 ENPEPQ07075 957 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 ATP1A4Q13733 1029 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 BROXQ5VW32 411 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 P4HA3Q7Z4N8 544 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 RANBP3LQ86VV4 465 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-219ENST00000620786 RIT1Q92963 219 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 MPP4Q96JB8 637 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 ZNF514Q96K75 400 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-219ENST00000620786 SAMD11Q96NU1 681 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 GSDMCQ9BYG8 508 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 SMG9Q9H0W8 520 aaKnown RBP11.23□□□□□ -0.61
CLIP1-219ENST00000620786 DIABLOQ9NR28 239 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 CDC14AQ9UNH5 594 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 OGNP20774 298 aaKnown RBP11.23□□□□□ -0.61
CLIP1-219ENST00000620786 ADSSP30520 456 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 RFX4Q33E94 735 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 ABRAXAS1Q6UWZ7 409 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 TSEN15Q8WW01 171 aaKnown RBP11.23□□□□□ -0.61
CLIP1-219ENST00000620786 ZHX1-C8orf76Q96EF9 292 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 FAXDC2Q96IV6 333 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 EBF3Q9H4W6 596 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 WDR55Q9H6Y2 383 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-219ENST00000620786 CKLFQ9UBR5 152 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 DCLK1O15075 740 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 HEPACAMQ14CZ8 416 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 SLC30A6Q6NXT4 461 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 Q6ZVU0 165 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 RALGPS2Q86X27 583 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-219ENST00000620786 FAM81AQ8TBF8 368 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 HOPXQ9BPY8 73 aaPredicted RBP11.23□□□□□ -0.61
CLIP1-219ENST00000620786 DZANK1Q9NVP4 752 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 CALML5Q9NZT1 146 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 CDH7Q9ULB5 785 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 PLLPQ9Y342 182 aa11.23□□□□□ -0.61
CLIP1-219ENST00000620786 NFAT5O94916 1531 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 IRGMA1A4Y4 181 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 FAM92AA1XBS5 289 aa11.22□□□□□ -0.61
CLIP1-219ENST00000620786 PDPK1O15530 556 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms