RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CEP44Q9C0F1 390 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 EPS15L1Q9UBC2 864 aa15.5■□□□□ 0.07
CPSF1-213ENST00000620219 PIP5K1BO14986 540 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 HOXB2P14652 356 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 HERVK_113P63132 956 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 TBL3Q12788 808 aaKnown RBP15.49■□□□□ 0.07
CPSF1-213ENST00000620219 TGFBIQ15582 683 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 EGFLAMQ63HQ2 1017 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 GK5Q6ZS86 529 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 MIPEPQ99797 713 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 ERVK-6Q9BXR3 956 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 PRSS21Q9Y6M0 314 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 MID1O15344 667 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 STK16O75716 305 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 CD160O95971 181 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 CAPN1P07384 714 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 COX4I1P13073 169 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 ACRV1P26436 265 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 LCP2Q13094 533 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 KLF10Q13118 480 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 KIRREL3Q8IZU9 778 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 GFM2Q969S9 779 aaKnown RBP15.49■□□□□ 0.07
CPSF1-213ENST00000620219 RCN3Q96D15 328 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 C19orf60Q96EN9 201 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 SIKE1Q9BRV8 207 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 RPP25Q9BUL9 199 aaKnown RBP15.49■□□□□ 0.07
CPSF1-213ENST00000620219 KERAO60938 352 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 MLYCDO95822 493 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 RPL10P27635 214 aaKnown RBP15.49■□□□□ 0.07
CPSF1-213ENST00000620219 CAMK2GQ13555 558 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-213ENST00000620219 ZDHHC20Q5W0Z9 365 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 PARS2Q7L3T8 475 aaKnown RBP15.49■□□□□ 0.07
CPSF1-213ENST00000620219 GPR149Q86SP6 731 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 KIAA1191Q96A73 305 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 MYADMQ96S97 322 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 RAD18Q9NS91 495 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 LNPEPQ9UIQ6 1025 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 TM7SF2O76062 418 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 PIK3R1P27986 724 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 THOP1P52888 689 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 GRSF1Q12849 480 aaKnown RBP eCLIP15.49■□□□□ 0.07
CPSF1-213ENST00000620219 STX5Q13190 355 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 PON2Q15165 354 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 GRAMD1BQ3KR37 738 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 EFL1Q7Z2Z2 1120 aaKnown RBP15.49■□□□□ 0.07
CPSF1-213ENST00000620219 SP7Q8TDD2 431 aaPredicted RBP15.49■□□□□ 0.07
CPSF1-213ENST00000620219 CDRT15Q96T59 188 aa15.49■□□□□ 0.07
CPSF1-213ENST00000620219 FBRSL1Q9HCM7 1045 aaKnown RBP15.49■□□□□ 0.07
CPSF1-213ENST00000620219 IMP3Q9NV31 184 aaKnown RBP15.49■□□□□ 0.07
CPSF1-213ENST00000620219 ULK1O75385 1050 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 MOSPD3O75425 235 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 KRT6AP02538 564 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 KRT6BP04259 564 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 ASGR2P07307 311 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 LBPP18428 481 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 MTHFRP42898 656 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 KCNC1P48547 511 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 KRT6CP48668 564 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 KYQ8NBH2 561 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 CLHC1Q8NHS4 586 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 FATE1Q969F0 183 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 SIPA1Q96FS4 1042 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 LRRC3BQ96PB8 259 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 NPAS2Q99743 824 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 BCAP29Q9UHQ4 241 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 OR51B4Q9Y5P0 310 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 STON1Q9Y6Q2 735 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 PENKP01210 267 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-213ENST00000620219 ZNF30P17039 623 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 ILF2Q12905 390 aaKnown RBP15.48■□□□□ 0.07
CPSF1-213ENST00000620219 COL9A2Q14055 689 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-213ENST00000620219 PPP1R3AQ16821 1122 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 ERN2Q76MJ5 926 aaKnown RBP15.48■□□□□ 0.07
CPSF1-213ENST00000620219 TDHQ8IZJ6 230 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 TRMOQ9BU70 441 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 WDR70Q9NW82 654 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-213ENST00000620219 DHRS7Q9Y394 339 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 TIMP2P16035 220 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 LHCGRP22888 699 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 IL12RB1P42701 662 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 RPL38P63173 70 aaKnown RBP15.48■□□□□ 0.07
CPSF1-213ENST00000620219 PCYOX1LQ8NBM8 494 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 PYDC1Q8WXC3 89 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 NSMCE3Q96MG7 304 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 CDCA3Q99618 268 aaPredicted RBP15.48■□□□□ 0.07
CPSF1-213ENST00000620219 ZSCAN5AQ9BUG6 496 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 DERL2Q9GZP9 239 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 IRAK4Q9NWZ3 460 aa15.48■□□□□ 0.07
CPSF1-213ENST00000620219 TRAFD1O14545 582 aaPredicted RBP15.47■□□□□ 0.07
CPSF1-213ENST00000620219 TSPAN6O43657 245 aa15.47■□□□□ 0.07
CPSF1-213ENST00000620219 GRIA2P42262 883 aa15.47■□□□□ 0.07
CPSF1-213ENST00000620219 TMEM115Q12893 351 aaPredicted RBP15.47■□□□□ 0.07
CPSF1-213ENST00000620219 GTF2H2Q13888 395 aa15.47■□□□□ 0.07
CPSF1-213ENST00000620219 HNRNPA1L2Q32P51 320 aaKnown RBP15.47■□□□□ 0.07
CPSF1-213ENST00000620219 GTF2H2CQ6P1K8 395 aa15.47■□□□□ 0.07
CPSF1-213ENST00000620219 TXNDC11Q6PKC3 985 aa15.47■□□□□ 0.07
CPSF1-213ENST00000620219 ZSWIM9Q86XI8 627 aa15.47■□□□□ 0.07
CPSF1-213ENST00000620219 SFTPA1Q8IWL2 248 aa15.47■□□□□ 0.07
CPSF1-213ENST00000620219 ALG14Q96F25 216 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms