RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 RAXQ9Y2V3 346 aa15.82■□□□□ 0.12
TRIM28-213ENST00000598355 AK5Q9Y6K8 562 aa15.82■□□□□ 0.12
TRIM28-213ENST00000598355 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.82■□□□□ 0.123e-12■□□□□ 10.7
TRIM28-213ENST00000598355 MN1Q10571 1320 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-213ENST00000598355 SDK2Q58EX2 2172 aa15.82■□□□□ 0.12
TRIM28-213ENST00000598355 ITPR1Q14643 2758 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 OR52A4PA6NMU1 304 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 AP2A2O94973 939 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 GOT2P00505 430 aaKnown RBP15.81■□□□□ 0.12
TRIM28-213ENST00000598355 HOXB3P14651 431 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-213ENST00000598355 ARNTP27540 789 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 NSG1P42857 185 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 NPY2RP49146 381 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 C16orf72Q14CZ0 275 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 TRIP13Q15645 432 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-213ENST00000598355 SEPT7Q16181 437 aaKnown RBP15.81■□□□□ 0.12
TRIM28-213ENST00000598355 NKAIN2Q5VXU1 208 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 ANKRD22Q5VYY1 191 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 TMEM71Q6P5X7 295 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 RAB11FIP2Q7L804 512 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 MCUQ8NE86 351 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 GPR150Q8NGU9 434 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 OR10G6Q8NH81 332 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 GRK7Q8WTQ7 553 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 NAPGQ99747 312 aaPredicted RBP15.81■□□□□ 0.12
TRIM28-213ENST00000598355 BFARQ9NZS9 450 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 OGFRQ9NZT2 677 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 TMEM9Q9P0T7 183 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 PCYOX1Q9UHG3 505 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 ACSL6Q9UKU0 697 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 ACSL5Q9ULC5 683 aa15.81■□□□□ 0.12
TRIM28-213ENST00000598355 FAM208BQ5VWN6 2430 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 QSOX1O00391 747 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 VIPP01282 170 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 MLNP12872 115 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 PBLDP30039 288 aaPredicted RBP15.8■□□□□ 0.12
TRIM28-213ENST00000598355 EIF2S3P41091 472 aaKnown RBP15.8■□□□□ 0.12
TRIM28-213ENST00000598355 HALP42357 657 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 VPS41P49754 854 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 SESN2P58004 480 aaPredicted RBP15.8■□□□□ 0.12
TRIM28-213ENST00000598355 CRADDP78560 199 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 RPE65Q16518 533 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 LYPLAL1Q5VWZ2 237 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 CAPRIN2Q6IMN6 1127 aaKnown RBP15.8■□□□□ 0.12
TRIM28-213ENST00000598355 CERS6Q6ZMG9 384 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 USP53Q70EK8 1073 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 CAND1Q86VP6 1230 aaKnown RBP15.8■□□□□ 0.12
TRIM28-213ENST00000598355 LILRA3Q8N6C8 439 aaPredicted RBP15.8■□□□□ 0.12
TRIM28-213ENST00000598355 OR4L1Q8NH43 312 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 FGF11Q92914 225 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 CCDC74BQ96LY2 380 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 RMDN2Q96LZ7 410 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 TBC1D10AQ9BXI6 508 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 COG4Q9H9E3 785 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 CHRAC1Q9NRG0 131 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 THSD1Q9NS62 852 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 SYBUQ9NX95 663 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 SOX13Q9UN79 622 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 PCDHGA7Q9Y5G6 932 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 CHD6Q8TD26 2715 aa15.8■□□□□ 0.12
TRIM28-213ENST00000598355 PRAMEF33A0A0G2JMD5 474 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 C9P02748 559 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 MTHFD1P11586 935 aaKnown RBP15.79■□□□□ 0.12
TRIM28-213ENST00000598355 MGAT1P26572 445 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 PRAMEP78395 509 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 PTK6Q13882 451 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 GPR18Q14330 331 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 SEMA3AQ14563 771 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 TAS2R42Q7RTR8 314 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 ARHGAP22Q7Z5H3 698 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 TRIM48Q8IWZ4 208 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 CLDN19Q8N6F1 224 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 NAT8LQ8N9F0 302 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.79■□□□□ 0.12
TRIM28-213ENST00000598355 CXorf40BQ96DE9 158 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 B3GNT4Q9C0J1 378 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 DDX47Q9H0S4 455 aaKnown RBP15.79■□□□□ 0.12
TRIM28-213ENST00000598355 OR52A5Q9H2C5 316 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 VPS37BQ9H9H4 285 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 SSUH2Q9Y2M2 353 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 LOXL2Q9Y4K0 774 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 SAR1BQ9Y6B6 198 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 PRSS21Q9Y6M0 314 aa15.79■□□□□ 0.12
TRIM28-213ENST00000598355 CTAGE9A4FU28 777 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 SNRNP200O75643 2136 aaKnown RBP15.78■□□□□ 0.12
TRIM28-213ENST00000598355 ANKRD34CP0C6C1 535 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 NMBRP28336 390 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 PTGIRP43119 386 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 CAPZBP47756 277 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 PCBP4P57723 403 aaKnown RBP15.78■□□□□ 0.12
TRIM28-213ENST00000598355 RPA4Q13156 261 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 PHF19Q5T6S3 580 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 RNASEH2BQ5TBB1 312 aaKnown RBP15.78■□□□□ 0.12
TRIM28-213ENST00000598355 KIAA0930Q6ICG6 404 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-213ENST00000598355 MPP5Q8N3R9 675 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 FBXO39Q8N4B4 442 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 SPDYE1Q8NFV5 336 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-213ENST00000598355 ZFPM2Q8WW38 1151 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 SERPINB12Q96P63 405 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 INSM2Q96T92 566 aaPredicted RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms