RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, human

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-205	ENST00000598209	RNF14	Q9UBS8	474 aa		13.58	□□□□□ -0.24
UPF1-205	ENST00000598209	ASIC3	Q9UHC3	531 aa		13.58	□□□□□ -0.24
UPF1-205	ENST00000598209	ACSL5	Q9ULC5	683 aa		13.58	□□□□□ -0.24
UPF1-205	ENST00000598209	SOX13	Q9UN79	622 aa		13.58	□□□□□ -0.24
UPF1-205	ENST00000598209	PRSS21	Q9Y6M0	314 aa		13.58	□□□□□ -0.24
UPF1-205	ENST00000598209	APC2	O95996	2303 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	PRAMEF33	A0A0G2JMD5	474 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	C17orf113	A0A1B0GUU1	675 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	PMS2P1	A4D2B8	440 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	LILRA5	A6NI73	299 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	CCDC188	H7C350	402 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	POLB	P06746	335 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	MLN	P12872	115 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	HOXB3	P14651	431 aa	Predicted RBP	13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	CASQ1	P31415	396 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	MAPK9	P45984	424 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	ETF1	P62495	437 aa	Known RBP	13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	CFHR1	Q03591	330 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	SEMA3A	Q14563	771 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	RPE65	Q16518	533 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	PHF19	Q5T6S3	580 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	RNASEH2B	Q5TBB1	312 aa	Known RBP	13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	ARMC3	Q5W041	872 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	CASC4	Q6P4E1	433 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	FOXR1	Q6PIV2	292 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	CES3	Q6UWW8	571 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	CERS6	Q6ZMG9	384 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	ZNF574	Q6ZN55	896 aa	Predicted RBP	13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	PPIL6	Q8IXY8	311 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	CFAP206	Q8IYR0	622 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	LILRA3	Q8N6C8	439 aa	Predicted RBP	13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	NAT8L	Q8N9F0	302 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	OR4D9	Q8NGE8	314 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	MFSD3	Q96ES6	412 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	RUNDC3B	Q96NL0	473 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	SERPINB12	Q96P63	405 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	DPYSL5	Q9BPU6	564 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	WWP1	Q9H0M0	922 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	XAB2	Q9HCS7	855 aa	Known RBP	13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	ANAPC5	Q9UJX4	755 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	ASPM	Q8IZT6	3477 aa		13.57	□□□□□ -0.24
UPF1-205	ENST00000598209	IGHV5-10-1	A0A0J9YXX1	117 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	AGRP	O00253	132 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	QSOX1	O00391	747 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	DNALI1	O14645	258 aa	Predicted RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	OR1I1	O60431	355 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	DXO	O77932	396 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	GSTM1	P09488	218 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	SLC35G4	P0C7Q5	338 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	MTHFD1	P11586	935 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	PPARG	P37231	505 aa	Predicted RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	LIMK2	P53671	638 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	DR1	Q01658	176 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	GSTM4	Q03013	218 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	EIF3I	Q13347	325 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	GPR18	Q14330	331 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	ZNF658B	Q4V348	819 aa	Predicted RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	AARS2	Q5JTZ9	985 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	TMEM71	Q6P5X7	295 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	SYT10	Q6XYQ8	523 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	SYDE1	Q6ZW31	735 aa	Predicted RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	RAB11FIP2	Q7L804	512 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	LDB1	Q86U70	411 aa	Predicted RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	RBM12B	Q8IXT5	1001 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	LSMEM2	Q8N112	164 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	FBXO39	Q8N4B4	442 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	GPR150	Q8NGU9	434 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	NCSTN	Q92542	709 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	PRR11	Q96HE9	360 aa	Predicted RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	CCDC74B	Q96LY2	380 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	RMDN2	Q96LZ7	410 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	C12orf66	Q96MD2	445 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	INSM2	Q96T92	566 aa	Predicted RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	EPB41L1	Q9H4G0	881 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	COG4	Q9H9E3	785 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	SLC40A1	Q9NP59	571 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	IMP3	Q9NV31	184 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	TMEM9	Q9P0T7	183 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	SAMD15	Q9P1V8	674 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	MARCH4	Q9P2E8	410 aa	Predicted RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	PCDHGA8	Q9Y5G5	932 aa		13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	CFAP20	Q9Y6A4	193 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	URB1	O60287	2271 aa	Known RBP	13.56	□□□□□ -0.24
UPF1-205	ENST00000598209	WDFY3	Q8IZQ1	3526 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	SDR42E2	A6NKP2	422 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	SRRM3	A6NNA2	597 aa	Predicted RBP	13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	PLD2	O14939	933 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	CD3EAP	O15446	510 aa	Known RBP	13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	TLX3	O43711	291 aa	Predicted RBP	13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	VAPB	O95292	243 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	OR56A5	P0C7T3	313 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	THRA	P10827	490 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	MPST	P25325	297 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	ARNT	P27540	789 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	RBMS1	P29558	406 aa	Known RBP	13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	MAGEA3	P43357	314 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	C16orf72	Q14CZ0	275 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	TBC1D25	Q3MII6	688 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	IZUMO3	Q5VZ72	239 aa		13.55	□□□□□ -0.24
UPF1-205	ENST00000598209	CAPRIN2	Q6IMN6	1127 aa	Known RBP	13.55	□□□□□ -0.24

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