RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 GALNT13Q8IUC8 556 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 NUDCD3Q8IVD9 361 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 FAM160A2Q8N612 972 aaPredicted RBP14.99□□□□□ -0.01
TRIM28-209ENST00000597423 OR56A4Q8NGH8 313 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 OR2L2Q8NH16 312 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 PPP1R14CQ8TAE6 165 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 SKA1Q96BD8 255 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 BMFQ96LC9 184 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 WDR92Q96MX6 357 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 FOPNLQ96NB1 174 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 GPR78Q96P69 363 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 MYOCQ99972 504 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 LGR4Q9BXB1 951 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 TRIM54Q9BYV2 358 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 GALPQ9UBC7 116 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 FBXO4Q9UKT5 387 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 INVSQ9Y283 1065 aa14.99□□□□□ -0.01
TRIM28-209ENST00000597423 ZNF106Q9H2Y7 1883 aaKnown RBP14.99□□□□□ -0.01
TRIM28-209ENST00000597423 POM121BA6NF01 834 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 H2AFYO75367 372 aaKnown RBP14.98□□□□□ -0.01
TRIM28-209ENST00000597423 SLCO2B1O94956 709 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 CEACAM5P06731 702 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 C8GP07360 202 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 BPGMP07738 259 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 DHRS4L1P0CG22 281 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 GLRBP48167 497 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 GYS2P54840 703 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 IRX4P78413 519 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 ARHGAP8P85298 464 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 CSTF1Q05048 431 aaKnown RBP14.98□□□□□ -0.01
TRIM28-209ENST00000597423 DLG1Q12959 904 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 RPA4Q13156 261 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 BOP1Q14137 746 aaKnown RBP14.98□□□□□ -0.01
TRIM28-209ENST00000597423 ACSBG2Q5FVE4 666 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 ENPP7Q6UWV6 458 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 RAB44Q7Z6P3 723 aaPredicted RBP14.98□□□□□ -0.01
TRIM28-209ENST00000597423 ABI3BPQ7Z7G0 1075 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 ADAMTSL2Q86TH1 951 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 ISCA2Q86U28 154 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 CFAP206Q8IYR0 622 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 SPATA6LQ8N4H0 392 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 BEND7Q8N7W2 519 aaPredicted RBP14.98□□□□□ -0.01
TRIM28-209ENST00000597423 DTWD2Q8NBA8 298 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 TMEM145Q8NBT3 493 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 HM13Q8TCT9 377 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 SKA2Q8WVK7 121 aaPredicted RBP14.98□□□□□ -0.01
TRIM28-209ENST00000597423 CCDC97Q96F63 343 aaPredicted RBP14.98□□□□□ -0.01
TRIM28-209ENST00000597423 KLHDC7BQ96G42 594 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 MAGEB18Q96M61 343 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 SLC30A3Q99726 388 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 DUSP15Q9H1R2 295 aaPredicted RBP14.98□□□□□ -0.01
TRIM28-209ENST00000597423 MLXIPLQ9NP71 852 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 AASDHPPTQ9NRN7 309 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 ZNF358Q9NW07 568 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 MOSPD1Q9UJG1 213 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 RNF112Q9ULX5 631 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 SCN8AQ9UQD0 1980 aa14.98□□□□□ -0.01
TRIM28-209ENST00000597423 PLXNA2O75051 1894 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 TRPM6Q9BX84 2022 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 BTN3A1O00481 513 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 SLC16A5O15375 505 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 GPC4O75487 556 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 S100BP04271 92 aaPredicted RBP14.97□□□□□ -0.01
TRIM28-209ENST00000597423 HIST1H2AGP0C0S8 130 aaPredicted RBP14.97□□□□□ -0.01
TRIM28-209ENST00000597423 HIST1H2ADP20671 130 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 ATP5F1P24539 256 aaPredicted RBP14.97□□□□□ -0.01
TRIM28-209ENST00000597423 FNTBP49356 437 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 PGGT1BP53609 377 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 GUCY1A3Q02108 690 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 PPARDQ03181 441 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 ATG16L1Q676U5 607 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 CRTC3Q6UUV7 619 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 ZYG11AQ6WRX3 759 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 GCNT7Q6ZNI0 430 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 FRA10AC1Q70Z53 315 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 IQCHQ86VS3 1027 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 GPSM1Q86YR5 675 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 SLC22A9Q8IVM8 553 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 FBXL6Q8N531 539 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 FRMD1Q8N878 549 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 MFSD2AQ8NA29 543 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 GIMAP7Q8NHV1 300 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 RAB3IL1Q8TBN0 382 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 LKAAEAR1Q8TD35 194 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 LRRC8CQ8TDW0 803 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 CKAP2Q8WWK9 683 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 GLMNQ92990 594 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 SCARF2Q96GP6 870 aaPredicted RBP14.97□□□□□ -0.01
TRIM28-209ENST00000597423 HIST1H2AHQ96KK5 128 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 HIST1H2AJQ99878 128 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 TIMM29Q9BSF4 260 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 H2AFJQ9BTM1 129 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 DPEP2Q9H4A9 486 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 ALG9Q9H6U8 611 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 CPSF2Q9P2I0 782 aaKnown RBP14.97□□□□□ -0.01
TRIM28-209ENST00000597423 COPG2Q9UBF2 871 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 XPR1Q9UBH6 696 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 MBD1Q9UIS9 605 aaPredicted RBP14.97□□□□□ -0.01
TRIM28-209ENST00000597423 EMCNQ9ULC0 261 aa14.97□□□□□ -0.01
TRIM28-209ENST00000597423 ACSL5Q9ULC5 683 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms