RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 PAQR9Q6ZVX9 377 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 TLK2Q86UE8 772 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 CDH24Q86UP0 819 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 DEFB106AQ8N104 65 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 FNDC5Q8NAU1 212 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 PIK3C3Q8NEB9 887 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 DNAJB3Q8WWF6 145 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 RMDN1Q96DB5 314 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 ITCHQ96J02 903 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 SEMA4BQ9NPR2 832 aaPredicted RBP9.47□□□□□ -0.89
CCDC40-212ENST00000574799 TMPRSS4Q9NRS4 437 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 FAM118AQ9NWS6 357 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 SLCO3A1Q9UIG8 710 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 GREB1Q4ZG55 1949 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 UBXN8O00124 270 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 AZIN1O14977 448 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 HSD17B1P14061 328 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 ATF4P18848 351 aaPredicted RBP9.47□□□□□ -0.89
CCDC40-212ENST00000574799 CXCR2P25025 360 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 SLC26A3P40879 764 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 MADCAM1Q13477 382 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 RBBP7Q16576 425 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 C9orf57Q5W0N0 161 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 XAF1Q6GPH4 301 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 ESRP1Q6NXG1 681 aaKnown RBP9.47□□□□□ -0.89
CCDC40-212ENST00000574799 CLEC14AQ86T13 490 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 LYSMD2Q8IV50 215 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 TP53INP2Q8IXH6 220 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 CHDHQ8NE62 594 aaPredicted RBP9.47□□□□□ -0.89
CCDC40-212ENST00000574799 SLC22A17Q8WUG5 538 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 KIF12Q96FN5 646 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 PHOX2BQ99453 314 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 PARK7Q99497 189 aaKnown RBP9.47□□□□□ -0.89
CCDC40-212ENST00000574799 RBM4BQ9BQ04 359 aaKnown RBP9.47□□□□□ -0.89
CCDC40-212ENST00000574799 RBM4Q9BWF3 364 aaKnown RBP9.47□□□□□ -0.89
CCDC40-212ENST00000574799 SIK2Q9H0K1 926 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 NECTIN3Q9NQS3 549 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 THG1LQ9NWX6 298 aaKnown RBP9.47□□□□□ -0.89
CCDC40-212ENST00000574799 RAPGEFL1Q9UHV5 662 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 USP22Q9UPT9 525 aa9.47□□□□□ -0.89
CCDC40-212ENST00000574799 NRCAMQ92823 1304 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 ZCWPW2A0A1B0GU75 182 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 I6L893 689 aaPredicted RBP9.46□□□□□ -0.89
CCDC40-212ENST00000574799 ACOX3O15254 700 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 SERPINI2O75830 405 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 ALX3O95076 343 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 PGK1P00558 417 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 NTRK1P04629 796 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 ADARB1P78563 741 aaKnown RBP9.46□□□□□ -0.89
CCDC40-212ENST00000574799 EMX1Q04741 257 aaPredicted RBP9.46□□□□□ -0.89
CCDC40-212ENST00000574799 UBE3AQ05086 875 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 GRB7Q14451 532 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 DMC1Q14565 340 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 CCDC85BQ15834 202 aaPredicted RBP9.46□□□□□ -0.89
CCDC40-212ENST00000574799 ATAD3CQ5T2N8 411 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 ARHGAP17Q68EM7 881 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 DPP9Q86TI2 863 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 PROSER1Q86XN7 944 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 UBE2J2Q8N2K1 259 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 TCAIMQ8N3R3 496 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 ATG16L2Q8NAA4 619 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 SLC7A14Q8TBB6 771 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 JPH3Q8WXH2 748 aaPredicted RBP9.46□□□□□ -0.89
CCDC40-212ENST00000574799 PIK3R3Q92569 461 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 NDRG1Q92597 394 aaKnown RBP9.46□□□□□ -0.89
CCDC40-212ENST00000574799 PABPC5Q96DU9 382 aaKnown RBP9.46□□□□□ -0.89
CCDC40-212ENST00000574799 MED10Q9BTT4 135 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 ZNF385DQ9H6B1 395 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 CYP3A43Q9HB55 503 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 MAGEL2Q9UJ55 1249 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 TSR3Q9UJK0 312 aaKnown RBP9.46□□□□□ -0.89
CCDC40-212ENST00000574799 FNDC3AQ9Y2H6 1198 aaKnown RBP9.46□□□□□ -0.89
CCDC40-212ENST00000574799 SNTNA6NMZ2 147 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 BEST1O76090 585 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 BMPR1AP36894 532 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 DIO3P55073 304 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 RBP5P82980 135 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 MFSD10Q14728 455 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 GPR162Q16538 588 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 ZNF181Q2M3W8 571 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 AGAP6Q5VW22 663 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 TMEM135Q86UB9 458 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 ADHFE1Q8IWW8 467 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 DCP1BQ8IZD4 617 aaKnown RBP9.46□□□□□ -0.89
CCDC40-212ENST00000574799 AGAP4Q96P64 663 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 VPS35Q96QK1 796 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 APOL4Q9BPW4 351 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 MEAF6Q9HAF1 191 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 AMBNQ9NP70 447 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 GTF2IRD1Q9UHL9 959 aa9.46□□□□□ -0.89
CCDC40-212ENST00000574799 EVLQ9UI08 416 aaPredicted RBP9.46□□□□□ -0.89
CCDC40-212ENST00000574799 NYNRINQ9P2P1 1898 aaKnown RBP9.46□□□□□ -0.9
CCDC40-212ENST00000574799 PLXNA3P51805 1871 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 TYW5A2RUC4 315 aaKnown RBP9.46□□□□□ -0.9
CCDC40-212ENST00000574799 MEN1O00255 615 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 NOS1APO75052 506 aaPredicted RBP9.46□□□□□ -0.9
CCDC40-212ENST00000574799 SIX3O95343 332 aaPredicted RBP9.46□□□□□ -0.9
CCDC40-212ENST00000574799 PTTG1O95997 202 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 RAP2AP10114 183 aa9.46□□□□□ -0.9
CCDC40-212ENST00000574799 ERCC2P18074 760 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms