RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 OOSP2Q86WS3 158 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 CREBRFQ8IUR6 639 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 GPR150Q8NGU9 434 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 OR2Y1Q8NGV0 311 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 REPIN1Q9BWE0 567 aaKnown RBP17.58■□□□□ 0.4
CLK3-227ENST00000570296 SLC7A5P2Q9GIP4 190 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 ARFGAP3Q9NP61 516 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 GPATCH2LQ9NWQ4 482 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 PKD2L2Q9NZM6 624 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 NOCTQ9UK39 431 aaKnown RBP17.58■□□□□ 0.4
CLK3-227ENST00000570296 WDR37Q9Y2I8 494 aa17.58■□□□□ 0.4
CLK3-227ENST00000570296 STAB1Q9NY15 2570 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 ANKRD62A6NC57 917 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 TMEM150CB9EJG8 249 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 AGPSO00116 658 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 CLDN14O95500 239 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 VCLP18206 1134 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 IL4RP24394 825 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 MMP13P45452 471 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 CDR2Q01850 454 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 Q0VFX4 171 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 INAQ16352 499 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 IRAK1BP1Q5VVH5 260 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 ZNF547Q8IVP9 402 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 ACBD4Q8NC06 268 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 CHDHQ8NE62 594 aaPredicted RBP17.57■□□□□ 0.4
CLK3-227ENST00000570296 SLC20A1Q8WUM9 679 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 DHX35Q9H5Z1 703 aaKnown RBP17.57■□□□□ 0.4
CLK3-227ENST00000570296 ADAM22Q9P0K1 906 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 GPN3Q9UHW5 284 aaPredicted RBP17.57■□□□□ 0.4
CLK3-227ENST00000570296 FHOD1Q9Y613 1164 aa17.57■□□□□ 0.4
CLK3-227ENST00000570296 C1orf232A0A0U1RR37 186 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 SLC9B1P1A6NJY1 282 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 HSP90AA1P07900 732 aaKnown RBP17.56■□□□□ 0.4
CLK3-227ENST00000570296 DESP17661 470 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 ADORA2A-AS1P86434 159 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 MARC1Q5VT66 337 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 PRAMEF13Q5VWM6 474 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 MLIPQ5VWP3 458 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 ARMC6Q6NXE6 501 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 B4GALNT4Q76KP1 1039 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 CCHCR1Q8TD31 782 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 NSMCE1Q8WV22 266 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 TEKT4Q8WW24 435 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 NACC2Q96BF6 587 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 PTERQ96BW5 349 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 TIGD1Q96MW7 591 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 ENKD1Q9H0I2 346 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 TRIM10Q9UDY6 481 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 SERTAD3Q9UJW9 196 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 COL6A5A8TX70 2615 aa17.56■□□□□ 0.4
CLK3-227ENST00000570296 CCDC78A2IDD5 438 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 CALB1P05937 261 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 NSFP46459 744 aaKnown RBP17.55■□□□□ 0.4
CLK3-227ENST00000570296 KPNA2P52292 529 aaKnown RBP17.55■□□□□ 0.4
CLK3-227ENST00000570296 CASP6P55212 293 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 RPL26P61254 145 aaKnown RBP17.55■□□□□ 0.4
CLK3-227ENST00000570296 FMO1Q01740 532 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 RPE65Q16518 533 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 CA9Q16790 459 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 PDPK2PQ6A1A2 396 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 ANKRD20A12PQ8NF67 263 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 MAGEB10Q96LZ2 347 aaPredicted RBP17.55■□□□□ 0.4
CLK3-227ENST00000570296 KCTD15Q96SI1 283 aaPredicted RBP17.55■□□□□ 0.4
CLK3-227ENST00000570296 ZSCAN5AQ9BUG6 496 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 SPATA16Q9BXB7 569 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 NAA15Q9BXJ9 866 aaKnown RBP17.55■□□□□ 0.4
CLK3-227ENST00000570296 VPS16Q9H269 839 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 CXXC4Q9H2H0 198 aa17.55■□□□□ 0.4
CLK3-227ENST00000570296 RPL26L1Q9UNX3 145 aaKnown RBP17.55■□□□□ 0.4
CLK3-227ENST00000570296 E7EQ34 232 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 F8VZ95 297 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 ZNF749O43361 778 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 MAFKO60675 156 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 KCNJ13O60928 360 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 UNC5CO95185 931 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 KLK2P20151 261 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 PREPP48147 710 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 HCAR3P49019 387 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 ZNF135P52742 658 aaPredicted RBP17.54■□□□□ 0.4
CLK3-227ENST00000570296 CDH6P55285 790 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 PPP2R2AP63151 447 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 RBPJQ06330 500 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 ANKRD20A8PQ5CZ79 823 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 KLHDC7AQ5VTJ3 777 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 PLEKHA7Q6IQ23 1121 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 C11orf96Q7Z7L8 435 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 GLYATL1Q969I3 302 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 MCEEQ96PE7 176 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 TAAR6Q96RI8 345 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 TREX2Q9BQ50 279 aaPredicted RBP17.54■□□□□ 0.4
CLK3-227ENST00000570296 TDRD1Q9BXT4 1180 aaKnown RBP17.54■□□□□ 0.4
CLK3-227ENST00000570296 SLC6A20Q9NP91 592 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 C1GALT1Q9NS00 363 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 DTLQ9NZJ0 730 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 FBXL4Q9UKA2 621 aa17.54■□□□□ 0.4
CLK3-227ENST00000570296 RTTNQ86VV8 2226 aa17.53■□□□□ 0.4
CLK3-227ENST00000570296 TCRBV5S1A1TA0A578 114 aa17.53■□□□□ 0.4
CLK3-227ENST00000570296 CCDC66A2RUB6 948 aa17.53■□□□□ 0.4
CLK3-227ENST00000570296 UNGP13051 313 aaPredicted RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms