RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 SERPINB6P35237 376 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 RPL26P61254 145 aaKnown RBP15.77■□□□□ 0.12
CLK3-223ENST00000568488 SSPNQ14714 243 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 RPE65Q16518 533 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 SMTNL2Q2TAL5 461 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 POLNQ7Z5Q5 900 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 TRAM1L1Q8N609 369 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 OR1L3Q8NH93 324 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 DNAJB14Q8TBM8 379 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 CSPG4P5Q96PW8 444 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 TRIM7Q9C029 511 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 ZFYVE1Q9HBF4 777 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 CHST11Q9NPF2 352 aa15.77■□□□□ 0.12
CLK3-223ENST00000568488 RBM22Q9NW64 420 aaKnown RBP eCLIP15.77■□□□□ 0.129e-10■□□□□ 8.1
CLK3-223ENST00000568488 RPL26L1Q9UNX3 145 aaKnown RBP15.77■□□□□ 0.12
CLK3-223ENST00000568488 MTORP42345 2549 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 DCHS2Q6V1P9 2916 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 SLC9B1P1A6NJY1 282 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 HTR1EP28566 365 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 ZNF165P49910 485 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 ADCY2Q08462 1091 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 GTF2H3Q13889 308 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 KHDC1Q4VXA5 237 aaKnown RBP15.76■□□□□ 0.11
CLK3-223ENST00000568488 VWA2Q5GFL6 755 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 TCP11X2Q5H9J9 407 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 GDAP1Q8TB36 358 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 EID2BQ96D98 161 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 CNDP1Q96KN2 507 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 GBP5Q96PP8 586 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 ATP13A2Q9NQ11 1180 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 IMP3Q9NV31 184 aaKnown RBP15.76■□□□□ 0.11
CLK3-223ENST00000568488 P4HTMQ9NXG6 502 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 TAS2R14Q9NYV8 317 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 SHOC2Q9UQ13 582 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 BTRCQ9Y297 605 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 PTRH2Q9Y3E5 179 aaKnown RBP15.76■□□□□ 0.11
CLK3-223ENST00000568488 CFAP20Q9Y6A4 193 aaKnown RBP15.76■□□□□ 0.11
CLK3-223ENST00000568488 ZGRF1Q86YA3 2104 aa15.76■□□□□ 0.11
CLK3-223ENST00000568488 A0A1W2PQJ5 194 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 TMEM191CA6NGB0 347 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 KLF7O75840 302 aaPredicted RBP15.75■□□□□ 0.11
CLK3-223ENST00000568488 SPTBP11277 2137 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 BPIP17213 487 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 CDH3P22223 829 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 HADHAP40939 763 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 FOLR3P41439 243 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 PREPP48147 710 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 KPNA2P52292 529 aaKnown RBP15.75■□□□□ 0.11
CLK3-223ENST00000568488 NIPAL4Q0D2K0 466 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 TMEM115Q12893 351 aaPredicted RBP15.75■□□□□ 0.11
CLK3-223ENST00000568488 XRCC4Q13426 336 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 GALNT3Q14435 633 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 DPYSL2Q16555 572 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 C11orf96Q7Z7L8 435 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 ARRDC2Q8TBH0 407 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 ITLN2Q8WWU7 325 aaPredicted RBP15.75■□□□□ 0.11
CLK3-223ENST00000568488 TTC25Q96NG3 672 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 DHRS4Q9BTZ2 278 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.75■□□□□ 0.11
CLK3-223ENST00000568488 HAUS2Q9NVX0 235 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 GPN3Q9UHW5 284 aaPredicted RBP15.75■□□□□ 0.11
CLK3-223ENST00000568488 SERTAD3Q9UJW9 196 aa15.75■□□□□ 0.11
CLK3-223ENST00000568488 JRKO75564 520 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 POP7O75817 140 aaKnown RBP15.74■□□□□ 0.11
CLK3-223ENST00000568488 PIRTP0C851 137 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 POLR2CP19387 275 aaPredicted RBP15.74■□□□□ 0.11
CLK3-223ENST00000568488 IL1R2P27930 398 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 TESK1Q15569 626 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 CYP2A13Q16696 494 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 PDPK2PQ6A1A2 396 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 ALG1LQ6GMV1 187 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 PLEKHA7Q6IQ23 1121 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 FAM180AQ6UWF9 173 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 B4GALNT4Q76KP1 1039 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 MRGPRGQ86SM5 289 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 AMZ2Q86W34 360 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 RELTQ969Z4 430 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 DPH2Q9BQC3 489 aaPredicted RBP15.74■□□□□ 0.11
CLK3-223ENST00000568488 ADGRE3Q9BY15 652 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 GPR63Q9BZJ6 419 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 RAD18Q9NS91 495 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 SUCOQ9UBS9 1254 aaKnown RBP15.74■□□□□ 0.11
CLK3-223ENST00000568488 SVILO95425 2214 aa15.74■□□□□ 0.11
CLK3-223ENST00000568488 E7EQ34 232 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 MATN3O15232 486 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 MAP3K7O43318 606 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 ZNF749O43361 778 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 CD86P42081 329 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 TSFMP43897 325 aaKnown RBP15.73■□□□□ 0.11
CLK3-223ENST00000568488 SOX8P57073 446 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 KCNK10P57789 538 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 PRKAA1Q13131 559 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 ZNF169Q14929 603 aaPredicted RBP15.73■□□□□ 0.11
CLK3-223ENST00000568488 ZNF630Q2M218 657 aaPredicted RBP15.73■□□□□ 0.11
CLK3-223ENST00000568488 BOLA3Q53S33 107 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 ZNF789Q5FWF6 425 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 FKBP15Q5T1M5 1219 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 SPNS3Q6ZMD2 512 aa15.73■□□□□ 0.11
CLK3-223ENST00000568488 FAM83HQ6ZRV2 1179 aaPredicted RBP15.73■□□□□ 0.11
CLK3-223ENST00000568488 LRRC49Q8IUZ0 686 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms