RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 IGLV7-46A0A075B6I9 117 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 A0A087WW49 117 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 IGKV6D-41A0A0C4DH26 115 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 MED19A0JLT2 244 aaPredicted RBP2.6□□□□□ -1.99
VPS35-207ENST00000568191 C5orf60A6NFR6 353 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 E9PQ18 207 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 PLK4O00444 970 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 SORBS2O94875 1100 aaKnown RBP2.6□□□□□ -1.99
VPS35-207ENST00000568191 HRH2P25021 359 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 PSMA4P25789 261 aaKnown RBP2.6□□□□□ -1.99
VPS35-207ENST00000568191 NFKBIAP25963 317 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 CEACAM8P31997 349 aaPredicted RBP2.6□□□□□ -1.99
VPS35-207ENST00000568191 MSH2P43246 934 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 MMP15P51511 669 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 GALCP54803 685 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 CASP6P55212 293 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 PRAMEP78395 509 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 PPARDQ03181 441 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 LPAL2Q16609 132 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 SGSM1Q2NKQ1 1148 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 LRIF1Q5T3J3 769 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 SARM1Q6SZW1 724 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 GLDNQ6ZMI3 551 aaPredicted RBP2.6□□□□□ -1.99
VPS35-207ENST00000568191 SH2D6Q7Z4S9 175 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 ARHGAP12Q8IWW6 846 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 TEX11Q8IYF3 940 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 SPAG16Q8N0X2 631 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 ZNF614Q8N883 585 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 FAM222BQ8WU58 562 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 SEMA4DQ92854 862 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 ARHGEF2Q92974 986 aaKnown RBP2.6□□□□□ -1.99
VPS35-207ENST00000568191 MOCOSQ96EN8 888 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 MAGED4Q96JG8 741 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 TBATAQ96M53 351 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 SYT11Q9BT88 431 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 P2RY12Q9H244 342 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 SEMA6AQ9H2E6 1030 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 MTMR10Q9NXD2 777 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 KLHL8Q9P2G9 620 aaPredicted RBP2.6□□□□□ -1.99
VPS35-207ENST00000568191 PDP2Q9P2J9 529 aa2.6□□□□□ -1.99
VPS35-207ENST00000568191 IGHV4-4A0A075B6R2 117 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 FAM237BA0A1B0GVD1 139 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 OR2M5A3KFT3 312 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 PLEKHD1A6NEE1 506 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 NPIPB15A6NHN6 443 aaPredicted RBP2.59□□□□□ -1.99
VPS35-207ENST00000568191 OR6C76A6NM76 312 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 TMEM189-UBE2V1I3L0A0 370 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 J3QR06 171 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 OGG1O15527 345 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 CRLF1O75462 422 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 TRMUO75648 421 aaKnown RBP2.59□□□□□ -1.99
VPS35-207ENST00000568191 CEBPBP17676 345 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 CDH2P19022 906 aaPredicted RBP2.59□□□□□ -1.99
VPS35-207ENST00000568191 CBLP22681 906 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 PSMC4P43686 418 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 GPR143P51810 404 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 CEBPZQ03701 1054 aaKnown RBP2.59□□□□□ -1.99
VPS35-207ENST00000568191 UBE2V1Q13404 147 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 ADALQ6DHV7 355 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 FAM109BQ6ICB4 259 aaPredicted RBP2.59□□□□□ -1.99
VPS35-207ENST00000568191 DNAJC22Q8N4W6 341 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 PDILTQ8N807 584 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 ANKRD52Q8NB46 1076 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 GRHL3Q8TE85 626 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 TRPC4APQ8TEL6 797 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 SENP5Q96HI0 755 aaPredicted RBP2.59□□□□□ -1.99
VPS35-207ENST00000568191 EGLN2Q96KS0 407 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 IWS1Q96ST2 819 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 VGLL1Q99990 258 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 CABLES2Q9BTV7 478 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 C1QTNF1Q9BXJ1 281 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 SH2D4AQ9H788 454 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 SCPEP1Q9HB40 452 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 UBN1Q9NPG3 1134 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 DIAPH3Q9NSV4 1193 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 IRAK4Q9NWZ3 460 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 MIOSQ9NXC5 875 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 TRMT1Q9NXH9 659 aaKnown RBP2.59□□□□□ -1.99
VPS35-207ENST00000568191 PAK5Q9P286 719 aa2.59□□□□□ -1.99
VPS35-207ENST00000568191 CCDC189A1A4V9 331 aa2.58□□□□□ -2
VPS35-207ENST00000568191 NPHP1O15259 732 aa2.58□□□□□ -2
VPS35-207ENST00000568191 ZNF217O75362 1048 aa2.58□□□□□ -2
VPS35-207ENST00000568191 EIF3JO75822 258 aaKnown RBP2.58□□□□□ -2
VPS35-207ENST00000568191 AP2A2O94973 939 aa2.58□□□□□ -2
VPS35-207ENST00000568191 EIF2S1P05198 315 aaKnown RBP2.58□□□□□ -2
VPS35-207ENST00000568191 PBX3P40426 434 aa2.58□□□□□ -2
VPS35-207ENST00000568191 WNT5AP41221 380 aa2.58□□□□□ -2
VPS35-207ENST00000568191 CCR10P46092 362 aa2.58□□□□□ -2
VPS35-207ENST00000568191 SLC6A12P48065 614 aa2.58□□□□□ -2
VPS35-207ENST00000568191 CCR9P51686 369 aa2.58□□□□□ -2
VPS35-207ENST00000568191 CDH11P55287 796 aa2.58□□□□□ -2
VPS35-207ENST00000568191 LMO4P61968 165 aa2.58□□□□□ -2
VPS35-207ENST00000568191 CDR2Q01850 454 aa2.58□□□□□ -2
VPS35-207ENST00000568191 PLA2G7Q13093 441 aa2.58□□□□□ -2
VPS35-207ENST00000568191 PCGF3Q3KNV8 242 aa2.58□□□□□ -2
VPS35-207ENST00000568191 RAB6CQ53S08 254 aa2.58□□□□□ -2
VPS35-207ENST00000568191 ADAMTSL4-AS1Q5T5F5 129 aa2.58□□□□□ -2
VPS35-207ENST00000568191 PWWP2BQ6NUJ5 590 aa2.58□□□□□ -2
VPS35-207ENST00000568191 TMEM154Q6P9G4 183 aa2.58□□□□□ -2
VPS35-207ENST00000568191 CYP20A1Q6UW02 462 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms