RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SULT1C3Q6IMI6 304 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 PSAPL1Q6NUJ1 521 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 SLC16A12Q6ZSM3 486 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 Q6ZSR9 355 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 GPR142Q7Z601 462 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 TBC1D21Q8IYX1 336 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 TMEM199Q8N511 208 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 DUS3LQ96G46 650 aaKnown RBP12.18□□□□□ -0.46
LDLR-205ENST00000557933 TSGA13Q96PP4 275 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 CCDC68Q9H2F9 335 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 CATSPERZQ9NTU4 200 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 RIC8BQ9NVN3 520 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 TBCCD1Q9NVR7 557 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 ERVK-18Q9QC07 812 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 MTRRQ9UBK8 725 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 ADGRE2Q9UHX3 823 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 ZNF229Q9UJW7 825 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 PDE10AQ9Y233 779 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 CPQQ9Y646 472 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 NYNRINQ9P2P1 1898 aaKnown RBP12.18□□□□□ -0.46
LDLR-205ENST00000557933 GPR182O15218 404 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 PAPSS2O95340 614 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 MYCLP1P12525 358 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 FDXRP22570 491 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 GP2P55259 537 aaKnown RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 CHRNB3Q05901 458 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 SYT16Q17RD7 645 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 INAVAQ3KP66 663 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 SOWAHCQ53LP3 525 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 INTS6LQ5JSJ4 861 aaKnown RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 LAIR2Q6ISS4 152 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 ALDH16A1Q8IZ83 802 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 CHDHQ8NE62 594 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 OR4L1Q8NH43 312 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 CHPT1Q8WUD6 406 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 SLC35B4Q969S0 331 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 FUBP1Q96AE4 644 aaKnown RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 SH3YL1Q96HL8 342 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 ALPK1Q96QP1 1244 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 PRKD2Q9BZL6 878 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 RIBC2Q9H4K1 309 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 CREBZFQ9NS37 354 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 FAM118AQ9NWS6 357 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 TUBA8Q9NY65 449 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 PTBP2Q9UKA9 531 aaKnown RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 HTR3EA5X5Y0 456 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 TRIM64CA6NLI5 447 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 BBIP1A8MTZ0 92 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 LRATO95237 230 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 OXSR1O95747 527 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 SLC2A4P14672 509 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 CASP9P55211 416 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 FAM174BQ3ZCQ3 159 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 LAIR1Q6GTX8 287 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 HACD2Q6Y1H2 254 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 MBOAT1Q6ZNC8 495 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 USP51Q70EK9 711 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 TLK2Q86UE8 772 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 OR7D4Q8NG98 312 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 FAM162AQ96A26 154 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 LINGO1Q96FE5 620 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 FAM105AQ9NUU6 356 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 AIG1Q9NVV5 245 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 GIN1Q9NXP7 522 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 SLCO3A1Q9UIG8 710 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 PRG3Q9Y2Y8 225 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 CAB39Q9Y376 341 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 HOXD8P13378 290 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 OR1E1P30953 314 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 LHX1P48742 406 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 ALDH3A2P51648 485 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 DGKEP52429 567 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 VAC14Q08AM6 782 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 RAPSNQ13702 412 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 ABRAXAS2Q15018 415 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 INAQ16352 499 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 ADPRMQ3LIE5 342 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 PDCD4Q53EL6 469 aaKnown RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 ZRANB3Q5FWF4 1079 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 C6orf141Q5SZD1 244 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 IQSEC1Q6DN90 963 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 Q6ZPB1 254 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 KIAA0408Q6ZU52 694 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 TAS2R42Q7RTR8 314 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 CLIP4Q8N3C7 705 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 PACRGLQ8N7B6 248 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 ATAD1Q8NBU5 361 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 OR6K2Q8NGY2 324 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 ZNF420Q8TAQ5 688 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 PNPT1Q8TCS8 783 aaKnown RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 SOCS4Q8WXH5 440 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 MBOAT4Q96T53 435 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 DOK1Q99704 481 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 TINF2Q9BSI4 451 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 ACTL8Q9H568 366 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 LEF1Q9UJU2 399 aaPredicted RBP12.17□□□□□ -0.46
LDLR-205ENST00000557933 ZNF451Q9Y4E5 1061 aa12.17□□□□□ -0.46
LDLR-205ENST00000557933 TSC2P49815 1807 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 M0R3G1 203 aa12.16□□□□□ -0.46
LDLR-205ENST00000557933 PSMD3O43242 534 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms