RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 FRA10AC1Q70Z53 315 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 DSG4Q86SJ6 1040 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 ZBTB2Q8N680 514 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 GPR26Q8NDV2 337 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 TMIEQ8NEW7 156 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 VOPP1Q96AW1 172 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 PPP1R16AQ96I34 528 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 HAUS8Q9BT25 410 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 THTPAQ9BU02 230 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 ZSCAN5AQ9BUG6 496 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 NUSAP1Q9BXS6 441 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 NUF2Q9BZD4 464 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 NKX2-4Q9H2Z4 354 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 KCTD5Q9NXV2 234 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 CDH7Q9ULB5 785 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 PRPF19Q9UMS4 504 aaKnown RBP12.48□□□□□ -0.41
SHMT2-229ENST00000557348 TRAF6Q9Y4K3 522 aa12.48□□□□□ -0.41
SHMT2-229ENST00000557348 NOTCH4Q99466 2003 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 TTC34A8MYJ7 566 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 H0Y858 1186 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 UBXN8O00124 270 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 LEFTY1O75610 366 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 CLPTM1O96005 669 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 CPOXP36551 454 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 ELP6Q0PNE2 266 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 LSM12Q3MHD2 195 aaKnown RBP12.47□□□□□ -0.41
SHMT2-229ENST00000557348 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.47□□□□□ -0.41
SHMT2-229ENST00000557348 DPPA4Q7L190 304 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 TSPAN33Q86UF1 283 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 TREML1Q86YW5 311 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 YAF2Q8IY57 180 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 NRSN1Q8IZ57 195 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 C12orf76Q8N812 135 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-229ENST00000557348 CHST14Q8NCH0 376 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 ADCY4Q8NFM4 1077 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 RP9Q8TA86 221 aaKnown RBP12.47□□□□□ -0.41
SHMT2-229ENST00000557348 AGR3Q8TD06 166 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 EEF1AKMT1Q8WVE0 214 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 OR8D1Q8WZ84 308 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 DLG3Q92796 817 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 EXT2Q93063 718 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 DCUN1D1Q96GG9 259 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 LRGUKQ96M69 825 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 SERPINI1Q99574 410 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 FAM83CQ9BQN1 747 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 FAM126AQ9BYI3 521 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-229ENST00000557348 NSUN3Q9H649 340 aaKnown RBP12.47□□□□□ -0.41
SHMT2-229ENST00000557348 PREBQ9HCU5 417 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 SARS2Q9NP81 518 aaKnown RBP12.47□□□□□ -0.41
SHMT2-229ENST00000557348 CD274Q9NZQ7 290 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 PCDHGA4Q9Y5G9 962 aa12.47□□□□□ -0.41
SHMT2-229ENST00000557348 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.47□□□□□ -0.41
SHMT2-229ENST00000557348 A0A088AWK7 358 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 NPEPPSL1A6NEC2 478 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 EIF4E1BA6NMX2 242 aaKnown RBP12.46□□□□□ -0.41
SHMT2-229ENST00000557348 E9PBE3 544 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 ZNF701M0R085 212 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-229ENST00000557348 DCXO43602 365 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 KLHL41O60662 606 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 SLC25A14O95258 325 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-229ENST00000557348 BAG2O95816 211 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 CAPNS1P04632 268 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 ENO2P09104 434 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-229ENST00000557348 C1SP09871 688 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 HNRNPLP14866 589 aaKnown RBP eCLIP12.46□□□□□ -0.41
SHMT2-229ENST00000557348 LHCGRP22888 699 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 VIPR2P41587 438 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 MAPK9P45984 424 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 ATP4BP51164 291 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 KDSRQ06136 332 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 FCHO2Q0JRZ9 810 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 KLF10Q13118 480 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 UBAP2LQ14157 1087 aaKnown RBP12.46□□□□□ -0.41
SHMT2-229ENST00000557348 ZNF284Q2VY69 593 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 HNRNPA1L2Q32P51 320 aaKnown RBP12.46□□□□□ -0.41
SHMT2-229ENST00000557348 ARSIQ5FYB1 569 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 VWA5B1Q5TIE3 1220 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 NXNQ6DKJ4 435 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 ANKRD54Q6NXT1 300 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 GET4Q7L5D6 327 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-229ENST00000557348 CPNE9Q8IYJ1 553 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 TRAM1L1Q8N609 369 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 PNPLA1Q8N8W4 532 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 OR56A4Q8NGH8 313 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 MAPK15Q8TD08 544 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 GDPD5Q8WTR4 605 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 CYB5D2Q8WUJ1 264 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 RTKNQ9BST9 563 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 FAM83DQ9H4H8 585 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 EBF3Q9H4W6 596 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 RDH14Q9HBH5 336 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 ZNHIT2Q9UHR6 403 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 PSMD13Q9UNM6 376 aa12.46□□□□□ -0.41
SHMT2-229ENST00000557348 DYTNA2CJ06 578 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 PABPN1LA6NDY0 278 aaKnown RBP12.45□□□□□ -0.42
SHMT2-229ENST00000557348 NPC1O15118 1278 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 ITGB7P26010 798 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 EPHA3P29320 983 aa12.45□□□□□ -0.42
SHMT2-229ENST00000557348 EEF1DP29692 281 aaKnown RBP12.45□□□□□ -0.42
SHMT2-229ENST00000557348 KCNC1P48547 511 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms