RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CFAP206Q8IYR0 622 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 SH3KBP1Q96B97 665 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 PWWP2AQ96N64 755 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 EBNA1BP2Q99848 306 aaKnown RBP13.33□□□□□ -0.28
SHMT2-228ENST00000557302 RAB17Q9H0T7 212 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 LRRN3Q9H3W5 708 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 SCHIP1Q9P0W5 487 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-228ENST00000557302 WHRNQ9P202 907 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 CPNE7Q9UBL6 633 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 ACSL5Q9ULC5 683 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 CLCA2Q9UQC9 943 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 KNTC1P50748 2209 aa13.33□□□□□ -0.28
SHMT2-228ENST00000557302 KMT2BQ9UMN6 2715 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-228ENST00000557302 ZFC3H1O60293 1989 aaKnown RBP13.32□□□□□ -0.28
SHMT2-228ENST00000557302 RP1P56715 2156 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 CTAGE15A4D2H0 777 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 FAM149AA5PLN7 773 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 FAM221BA6H8Z2 402 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 OR52A4PA6NMU1 304 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 PRMT5O14744 637 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-228ENST00000557302 TP73O15350 636 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 TCEA3O75764 348 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 TTC4O95801 387 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 VIPP01282 170 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 FTH1P02794 183 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 SLC35G4P0C7Q5 338 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 CTAGE8P0CG41 777 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 BRAFP15056 766 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 ALDH4A1P30038 563 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 OR1D5P58170 312 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 UBE2IP63279 158 aaKnown RBP13.32□□□□□ -0.28
SHMT2-228ENST00000557302 CCL7P80098 99 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 CRYMQ14894 314 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 LONRF1Q17RB8 773 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 TYSND1Q2T9J0 566 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 RNF187Q5TA31 235 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-228ENST00000557302 CDCP2Q5VXM1 449 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 ZNF449Q6P9G9 518 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 RBM44Q6ZP01 1051 aaKnown RBP13.32□□□□□ -0.28
SHMT2-228ENST00000557302 CTAGE6Q86UF2 777 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 LRRC6Q86X45 466 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 CTAGE4Q8IX94 777 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 CACTIN-AS1Q8N1I8 211 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 DCBLD1Q8N8Z6 715 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.32□□□□□ -0.28
SHMT2-228ENST00000557302 GPR150Q8NGU9 434 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 LRRC39Q96DD0 335 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 CXorf40BQ96DE9 158 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 DEPDC7Q96QD5 511 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 GFM1Q96RP9 751 aaKnown RBP13.32□□□□□ -0.28
SHMT2-228ENST00000557302 TCF12Q99081 682 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 SLC38A3Q99624 504 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 TSSK1BQ9BXA7 367 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 COG4Q9H9E3 785 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 C20orf96Q9NUD7 363 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-228ENST00000557302 KCNK4Q9NYG8 393 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 IL1RAPL1Q9NZN1 696 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 ZNF624Q9P2J8 865 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-228ENST00000557302 PSMD13Q9UNM6 376 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 WDR37Q9Y2I8 494 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 MSRB2Q9Y3D2 182 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 FAM169AQ9Y6X4 670 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 CHD8Q9HCK8 2581 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 ACACBO00763 2458 aa13.32□□□□□ -0.28
SHMT2-228ENST00000557302 A0A1W2PQM1 296 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 UBA6A0AVT1 1052 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 D6RAR5 112 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 NTN3O00634 580 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 CASC3O15234 703 aaKnown RBP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 B4GAT1O43505 415 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 OGNP20774 298 aaKnown RBP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 SLC19A1P41440 591 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 ELK3P41970 407 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 PPM1FP49593 454 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 TARDBPQ13148 414 aaKnown RBP eCLIP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 RPA4Q13156 261 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 CLCA4Q14CN2 919 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 RPE65Q16518 533 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 AMZ1Q400G9 498 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 SPANXN3Q5MJ09 141 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 ZNF470Q6ECI4 717 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 XKR5Q6UX68 686 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 CCNI2Q6ZMN8 369 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 ZNF761Q86XN6 746 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 CILP2Q8IUL8 1156 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 RBM12BQ8IXT5 1001 aaKnown RBP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 LMNTD2Q8IXW0 634 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 LILRA3Q8N6C8 439 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 CALML6Q8TD86 181 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 ELMO1Q92556 727 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 WWP1Q9H0M0 922 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 POT1Q9NUX5 634 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 GRHL1Q9NZI5 618 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 ZC3H7BQ9UGR2 993 aaKnown RBP13.31□□□□□ -0.28
SHMT2-228ENST00000557302 GNPTGQ9UJJ9 305 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 CHMP2BQ9UQN3 213 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 VPS9D1Q9Y2B5 631 aa13.31□□□□□ -0.28
SHMT2-228ENST00000557302 ZFHX4Q86UP3 3567 aa13.3□□□□□ -0.28
SHMT2-228ENST00000557302 LIN7AO14910 233 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms