RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 IYDQ6PHW0 289 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 DHRS13Q6UX07 377 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 NAPRTQ6XQN6 538 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 C17orf82Q86X59 251 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-225ENST00000556798 CCNJLQ8IV13 435 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 CFAP206Q8IYR0 622 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 SFRP1Q8N474 314 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 HM13Q8TCT9 377 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 MAPK15Q8TD08 544 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 LPGAT1Q92604 370 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 CERS2Q96G23 380 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 VPS37BQ9H9H4 285 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 FBXO6Q9NRD1 293 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-225ENST00000556798 FAM114A2Q9NRY5 505 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 ZDHHC18Q9NUE0 388 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 SLC17A6Q9P2U8 582 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 CRYL1Q9Y2S2 319 aa17.16■□□□□ 0.34
SHMT2-225ENST00000556798 OR52A4PA6NMU1 304 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 KCNJ13O60928 360 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 DKK1O94907 266 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 FTH1P02794 183 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 RHOXF2BP0C7M4 288 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 BIRC2Q13490 618 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 CLCA4Q14CN2 919 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 ZNF658BQ4V348 819 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-225ENST00000556798 CTSL3PQ5NE16 218 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 RNF187Q5TA31 235 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-225ENST00000556798 METRNLQ641Q3 311 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 ZNF761Q86XN6 746 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-225ENST00000556798 KRT222Q8N1A0 295 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 IFT81Q8WYA0 676 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 ELMO1Q92556 727 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 NAT6Q93015 286 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 CCDC3Q9BQI4 270 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 RHOXF2Q9BQY4 288 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 FAM167BQ9BTA0 163 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 WWP1Q9H0M0 922 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 P2RY12Q9H244 342 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 COG4Q9H9E3 785 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 PPANQ9NQ55 473 aaKnown RBP17.15■□□□□ 0.34
SHMT2-225ENST00000556798 LRIT1Q9P2V4 623 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 PCDHGA1Q9Y5H4 931 aa17.15■□□□□ 0.34
SHMT2-225ENST00000556798 QSOX1O00391 747 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 EIF3HO15372 352 aaKnown RBP eCLIP17.14■□□□□ 0.33
SHMT2-225ENST00000556798 TRIM16O95361 564 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 S1PR4O95977 384 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 SLC2A4P14672 509 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 GLB1P16278 677 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 FMO4P31512 558 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 PREPP48147 710 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 CSE1LP55060 971 aaKnown RBP17.14■□□□□ 0.33
SHMT2-225ENST00000556798 FOXC1Q12948 553 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 CBLBQ13191 982 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 ILKQ13418 452 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 BOP1Q14137 746 aaKnown RBP17.14■□□□□ 0.33
SHMT2-225ENST00000556798 BRD3Q15059 726 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 AGAP9Q5VTM2 703 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 PTRHD1Q6GMV3 140 aaKnown RBP17.14■□□□□ 0.33
SHMT2-225ENST00000556798 Q8N9G6 341 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-225ENST00000556798 SPDYE1Q8NFV5 336 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-225ENST00000556798 CALML6Q8TD86 181 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 PYROXD1Q8WU10 500 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 C9orf72Q96LT7 481 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 TCF12Q99081 682 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 SYNDIG1Q9H7V2 258 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 ZNF624Q9P2J8 865 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-225ENST00000556798 GNPTGQ9UJJ9 305 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 FBXO5Q9UKT4 447 aa17.14■□□□□ 0.33
SHMT2-225ENST00000556798 CFAP20Q9Y6A4 193 aaKnown RBP17.14■□□□□ 0.33
SHMT2-225ENST00000556798 KIR2DS5A0A0G2JLQ3 304 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 PRAMEF33A0A0G2JMD5 474 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 A0A0G2JNG1 304 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 C17orf113A0A1B0GUU1 675 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 RHPN2P1A8MT19 583 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 KIR2DS3K7RE56 304 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 PFDN6O15212 129 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 PPM1DO15297 605 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 NUDT21O43809 227 aaKnown RBP17.13■□□□□ 0.33
SHMT2-225ENST00000556798 NIPSNAP2O75323 286 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 TOP3BO95985 862 aaKnown RBP17.13■□□□□ 0.33
SHMT2-225ENST00000556798 GP1BAP07359 652 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 SLC35G4P0C7Q5 338 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 RPS3P23396 243 aaKnown RBP eCLIP17.13■□□□□ 0.335e-8■■■■□ 23.6
SHMT2-225ENST00000556798 SSTR1P30872 391 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 HALP42357 657 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 CARSP49589 748 aaKnown RBP17.13■□□□□ 0.33
SHMT2-225ENST00000556798 HHEXQ03014 270 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 KIR2DS5Q14953 304 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 TEX35Q5T0J7 233 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 DUS1LQ6P1R4 473 aaKnown RBP17.13■□□□□ 0.33
SHMT2-225ENST00000556798 ABRAXAS1Q6UWZ7 409 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 WASH2PQ6VEQ5 465 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 OR6C4Q8NGE1 309 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 GSDMBQ8TAX9 411 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 FAM136AQ96C01 138 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 RMDN2Q96LZ7 410 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 BIRC8Q96P09 236 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 WASH6PQ9NQA3 447 aa17.13■□□□□ 0.33
SHMT2-225ENST00000556798 INTS10Q9NVR2 710 aaKnown RBP17.13■□□□□ 0.33
SHMT2-225ENST00000556798 CPNE7Q9UBL6 633 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms