RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 RPE65Q16518 533 aa20.09■□□□□ 0.81
VTI1B-205ENST00000555543 SNAP47Q5SQN1 464 aa20.09■□□□□ 0.81
VTI1B-205ENST00000555543 TSTD2Q5T7W7 516 aa20.09■□□□□ 0.81
VTI1B-205ENST00000555543 COG1Q8WTW3 980 aa20.09■□□□□ 0.81
VTI1B-205ENST00000555543 PMEPA1Q969W9 287 aa20.09■□□□□ 0.81
VTI1B-205ENST00000555543 PBKQ96KB5 322 aa20.09■□□□□ 0.81
VTI1B-205ENST00000555543 RANBP9Q96S59 729 aa20.09■□□□□ 0.81
VTI1B-205ENST00000555543 FOXJ2Q9P0K8 574 aa20.09■□□□□ 0.81
VTI1B-205ENST00000555543 AHCTF1Q8WYP5 2266 aa20.09■□□□□ 0.81
VTI1B-205ENST00000555543 MN1Q10571 1320 aaPredicted RBP20.08■□□□□ 0.81
VTI1B-205ENST00000555543 USP27XA6NNY8 438 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 A8MU76 341 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 C9orf172C9J069 976 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 CFAP99D6REC4 459 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 GAS8O95995 478 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 FGF3P11487 239 aaPredicted RBP20.08■□□□□ 0.81
VTI1B-205ENST00000555543 GFERP55789 205 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 TRIP13Q15645 432 aaPredicted RBP20.08■□□□□ 0.81
VTI1B-205ENST00000555543 SKIDA1Q1XH10 827 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 ZNF658BQ4V348 819 aaPredicted RBP20.08■□□□□ 0.81
VTI1B-205ENST00000555543 DUS1LQ6P1R4 473 aaKnown RBP20.08■□□□□ 0.81
VTI1B-205ENST00000555543 PDZD3Q86UT5 571 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 CLDN19Q8N6F1 224 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 SPDYE1Q8NFV5 336 aaPredicted RBP20.08■□□□□ 0.81
VTI1B-205ENST00000555543 RSC1A1Q92681 617 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 USP7Q93009 1102 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 AP1M1Q9BXS5 423 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 WWP1Q9H0M0 922 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 EPB41L1Q9H4G0 881 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 HOMER3Q9NSC5 361 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 KLHL3Q9UH77 587 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 TTC7AQ9ULT0 858 aaPredicted RBP20.08■□□□□ 0.81
VTI1B-205ENST00000555543 TCAF1Q9Y4C2 921 aa20.08■□□□□ 0.81
VTI1B-205ENST00000555543 CFAP20Q9Y6A4 193 aaKnown RBP20.08■□□□□ 0.81
VTI1B-205ENST00000555543 MGAQ8IWI9 3026 aa20.08■□□□□ 0.8
VTI1B-205ENST00000555543 NVLO15381 856 aaKnown RBP20.07■□□□□ 0.8
VTI1B-205ENST00000555543 UBXN7O94888 489 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 ADRA1DP25100 572 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 ACVR1Q04771 509 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 C4orf22Q6V702 233 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 ZNF534Q76KX8 674 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 ARHGAP22Q7Z5H3 698 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 RBM12BQ8IXT5 1001 aaKnown RBP20.07■□□□□ 0.8
VTI1B-205ENST00000555543 AGBL5Q8NDL9 886 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 HM13Q8TCT9 377 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 HEXDCQ8WVB3 486 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 JPH3Q8WXH2 748 aaPredicted RBP20.07■□□□□ 0.8
VTI1B-205ENST00000555543 HDAC10Q969S8 669 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 RMDN2Q96LZ7 410 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 OSBPL9Q96SU4 736 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 INSM2Q96T92 566 aaPredicted RBP20.07■□□□□ 0.8
VTI1B-205ENST00000555543 IMP3Q9NV31 184 aaKnown RBP20.07■□□□□ 0.8
VTI1B-205ENST00000555543 OCIAD1Q9NX40 245 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 AKAP7Q9P0M2 348 aaPredicted RBP20.07■□□□□ 0.8
VTI1B-205ENST00000555543 ACSL6Q9UKU0 697 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 RIMKLBQ9ULI2 386 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 PRSS21Q9Y6M0 314 aa20.07■□□□□ 0.8
VTI1B-205ENST00000555543 TCRBV7S3A2A0A539 114 aa20.06■□□□□ 0.8
VTI1B-205ENST00000555543 KLK10O43240 276 aa20.06■□□□□ 0.8
VTI1B-205ENST00000555543 GOT2P00505 430 aaKnown RBP20.06■□□□□ 0.8
VTI1B-205ENST00000555543 POLBP06746 335 aa20.06■□□□□ 0.8
VTI1B-205ENST00000555543 MTHFD1P11586 935 aaKnown RBP20.06■□□□□ 0.8
VTI1B-205ENST00000555543 CSTF2P33240 577 aaKnown RBP eCLIP20.06■□□□□ 0.8
VTI1B-205ENST00000555543 CAPZBP47756 277 aa20.06■□□□□ 0.8
VTI1B-205ENST00000555543 VPS41P49754 854 aa20.06■□□□□ 0.8
VTI1B-205ENST00000555543 SESN2P58004 480 aaPredicted RBP20.06■□□□□ 0.8
VTI1B-205ENST00000555543 CRADDP78560 199 aa20.06■□□□□ 0.8
VTI1B-205ENST00000555543 CLN3Q13286 438 aa20.06■□□□□ 0.8
VTI1B-205ENST00000555543 DPH1Q9BZG8 443 aa20.06■□□□□ 0.8
VTI1B-205ENST00000555543 ACSL5Q9ULC5 683 aa20.06■□□□□ 0.8
VTI1B-205ENST00000555543 KLHL33A6NCF5 533 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 PGRMC1O00264 195 aaKnown RBP20.05■□□□□ 0.8
VTI1B-205ENST00000555543 KIF5CO60282 957 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 LEPRP48357 1165 aaKnown RBP20.05■□□□□ 0.8
VTI1B-205ENST00000555543 TERF1P54274 439 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 CYP1B1Q16678 543 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 AFTPHQ6ULP2 937 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 FAM129CQ86XR2 697 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 CFAP206Q8IYR0 622 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 BMPERQ8N8U9 685 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 PPHLN1Q8NEY8 458 aaKnown RBP20.05■□□□□ 0.8
VTI1B-205ENST00000555543 ART4Q93070 314 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 MAGOHBQ96A72 148 aaKnown RBP20.05■□□□□ 0.8
VTI1B-205ENST00000555543 C12orf66Q96MD2 445 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 PRORYQ9H606 182 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 COG4Q9H9E3 785 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 CHRAC1Q9NRG0 131 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 SNX12Q9UMY4 172 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 SSUH2Q9Y2M2 353 aa20.05■□□□□ 0.8
VTI1B-205ENST00000555543 EFCAB7A8K855 629 aa20.04■□□□□ 0.8
VTI1B-205ENST00000555543 ZNF185O15231 689 aa20.04■□□□□ 0.8
VTI1B-205ENST00000555543 CAPN5O15484 640 aaPredicted RBP20.04■□□□□ 0.8
VTI1B-205ENST00000555543 C9P02748 559 aa20.04■□□□□ 0.8
VTI1B-205ENST00000555543 SLC35G4P0C7Q5 338 aa20.04■□□□□ 0.8
VTI1B-205ENST00000555543 AMD1P17707 334 aa20.04■□□□□ 0.8
VTI1B-205ENST00000555543 TPSB2P20231 275 aa20.04■□□□□ 0.8
VTI1B-205ENST00000555543 COILP38432 576 aaPredicted RBP20.04■□□□□ 0.8
VTI1B-205ENST00000555543 PPP1CAP62136 330 aa20.04■□□□□ 0.8
VTI1B-205ENST00000555543 LAMB3Q13751 1172 aa20.04■□□□□ 0.8
VTI1B-205ENST00000555543 SEMA3AQ14563 771 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms