RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TBC1D3FA6NER0 549 aaPredicted RBP16.06■□□□□ 0.16
CUX1-213ENST00000549414 TBC1D3LB9A6J9 549 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 FAM189A1O60320 539 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 TBC1D3HP0C7X1 549 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 MTHFRP42898 656 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 TBC1D3GQ6DHY5 549 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 TBC1D3CQ6IPX1 549 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 TBC1D3Q8IZP1 549 aaPredicted RBP16.06■□□□□ 0.16
CUX1-213ENST00000549414 SFRP1Q8N474 314 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 NLNQ9BYT8 704 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 CLK4Q9HAZ1 481 aaKnown RBP16.06■□□□□ 0.16
CUX1-213ENST00000549414 LOC100506127A0A0U1RQW1 187 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 SGTAO43765 313 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 SLC35G4P0C7Q5 338 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 PRSS56P0CW18 603 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 NSG1P42857 185 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 ADGRE1Q14246 886 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 RFTN1Q14699 578 aaPredicted RBP16.06■□□□□ 0.16
CUX1-213ENST00000549414 LIN52Q52LA3 116 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 CGB2Q6NT52 195 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 SPACA6W5XKT8 324 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 TRBV23OR9-2A0A075B6M9 112 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 ADH1CP00326 375 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 SLC10A3P09131 477 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 CASP9P55211 416 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 PRMT2P55345 433 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 XIAPP98170 497 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 ZNF33AQ06730 810 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 KRT78Q8N1N4 520 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 STARD8Q92502 1023 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 HEPHQ9BQS7 1158 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 NSUN3Q9H649 340 aaKnown RBP16.06■□□□□ 0.16
CUX1-213ENST00000549414 TBC1D14Q9P2M4 693 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 PTGDR2Q9Y5Y4 395 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 A0A0U1RQS6 177 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.06■□□□□ 0.16
CUX1-213ENST00000549414 PDLIM1O00151 329 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 QSOX1O00391 747 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 KERAO60938 352 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 ATG13O75143 517 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 CYBAP13498 195 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 CPTPQ5TA50 214 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 TPGS2Q68CL5 300 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 TYW3Q6IPR3 259 aaKnown RBP16.06■□□□□ 0.16
CUX1-213ENST00000549414 UMODL1-AS1Q8N2C9 162 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 C10orf53Q8N6V4 93 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 FBXO27Q8NI29 283 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 ACDQ96AP0 544 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 SUV39H2Q9H5I1 410 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 RAB23Q9ULC3 237 aa16.06■□□□□ 0.16
CUX1-213ENST00000549414 CNOT6Q9ULM6 557 aaKnown RBP16.06■□□□□ 0.16
CUX1-213ENST00000549414 NUMA1Q14980 2115 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 ARAP2Q8WZ64 1704 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 ZCWPW2A0A1B0GU75 182 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 SMIM31A0A1B0GVY4 71 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 COL6A1P12109 1028 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 KCTD21Q4G0X4 260 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 SNX20Q7Z614 316 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 SCD5Q86SK9 330 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 OLFM1Q99784 485 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 RPS6KA6Q9UK32 745 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 PER2O15055 1255 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 INPPL1O15357 1258 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 CLTBP09497 229 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 MAGEA11P43364 429 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 PSMD8P48556 350 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 ZNF789Q5FWF6 425 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 TMEM220Q6QAJ8 160 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 MRPS26Q9BYN8 205 aaKnown RBP16.05■□□□□ 0.16
CUX1-213ENST00000549414 C6orf62Q9GZU0 229 aaPredicted RBP16.05■□□□□ 0.16
CUX1-213ENST00000549414 ELOVL7A1L3X0 281 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 G3V2T6 193 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 AXIN1O15169 862 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 CAPN13Q6MZZ7 669 aaPredicted RBP16.05■□□□□ 0.16
CUX1-213ENST00000549414 TUBGCP5Q96RT8 1024 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 ZBTB26Q9HCK0 441 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 RASSF1Q9NS23 344 aa16.05■□□□□ 0.16
CUX1-213ENST00000549414 ISM1B1AKI9 464 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 DLGAP3O95886 979 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 ANXA4P09525 319 aaPredicted RBP16.04■□□□□ 0.16
CUX1-213ENST00000549414 ETV4P43268 484 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 PCYT1AP49585 367 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 NEK2P51955 445 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 CYP4F3Q08477 520 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 STEAP4Q687X5 459 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 SULT1C3Q6IMI6 304 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 ABHD8Q96I13 439 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 VPS51Q9UID3 782 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 C2orf78A6NCI8 922 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 PTPN2P17706 415 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 SERPINB1P30740 379 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 DIO3P55073 304 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 PAQR9Q6ZVX9 377 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 KBTBD2Q8IY47 623 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 PPCDCQ96CD2 204 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 TMEM74Q96NL1 305 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 IL12RB2Q99665 862 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 C11orf49Q9H6J7 331 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 HCSTQ9UBK5 93 aa16.04■□□□□ 0.16
CUX1-213ENST00000549414 CARNS1A5YM72 827 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms