RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 AASSQ9UDR5 926 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 CNTNAP1P78357 1384 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 CYP11A1P05108 521 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 BLVRAP53004 296 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.07□□□□□ -0.162e-6■□□□□ 11.2
LIMS1-215ENST00000544547 AADATQ8N5Z0 425 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 ACVR1CQ8NER5 493 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 DNAJB3Q8WWF6 145 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 BOLA1Q9Y3E2 137 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 BCORQ6W2J9 1755 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 ZNF701M0R085 212 aaPredicted RBP14.07□□□□□ -0.16
LIMS1-215ENST00000544547 MYL12BO14950 172 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 POMCP01189 267 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 C8BP07358 591 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 HNF4AP41235 474 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 TSNQ15631 228 aaKnown RBP14.07□□□□□ -0.16
LIMS1-215ENST00000544547 CPSF6Q16630 551 aaKnown RBP eCLIP14.07□□□□□ -0.163e-8■■□□□ 13.6
LIMS1-215ENST00000544547 SULT1C3Q6IMI6 304 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 ERAP2Q6P179 960 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 PCDH10Q9P2E7 1040 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 I3L521 148 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 GUCY1B2O75343 617 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 POU2F1P14859 743 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 DPP6P42658 865 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 IL2P60568 153 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 FAM187BQ17R55 369 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 CES4AQ5XG92 561 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 EIF3MQ7L2H7 374 aaKnown RBP14.07□□□□□ -0.16
LIMS1-215ENST00000544547 ZDHHC21Q8IVQ6 265 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 CEP97Q8IW35 865 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 HS3ST5Q8IZT8 346 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 SLC34A3Q8N130 599 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 VPS35Q96QK1 796 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 ALPK1Q96QP1 1244 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 PDGFDQ9GZP0 370 aaPredicted RBP14.07□□□□□ -0.16
LIMS1-215ENST00000544547 MUC13Q9H3R2 512 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 SNTG1Q9NSN8 517 aa14.07□□□□□ -0.16
LIMS1-215ENST00000544547 FBXO9Q9UK97 447 aaPredicted RBP14.07□□□□□ -0.16
LIMS1-215ENST00000544547 CXCR6O00574 342 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 SLC35E2BP0CK96 405 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 NPR3P17342 541 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 PTPN9P43378 593 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 TUBB3Q13509 450 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 WSCD1Q658N2 575 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 HDDC2Q7Z4H3 204 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 C11orf96Q7Z7L8 435 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 OR8H3Q8N146 312 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 SIPA1Q96FS4 1042 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 ITCHQ96J02 903 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 CRISPLD1Q9H336 500 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 TIGARQ9NQ88 270 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 C12orf4Q9NQ89 552 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 MAP10Q9P2G4 905 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 MRPS7Q9Y2R9 242 aaKnown RBP14.06□□□□□ -0.16
LIMS1-215ENST00000544547 SESN1Q9Y6P5 492 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 HMX2A2RU54 273 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 NPEPPSL1A6NEC2 478 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 PLSCR1O15162 318 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 RGS14O43566 566 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 MLYCDO95822 493 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 CHRNA1P02708 482 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 YES1P07947 543 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 CTSKP43235 329 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 ENPEPQ07075 957 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 SCN1BQ07699 218 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 ELP6Q0PNE2 266 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 PLEKHG6Q3KR16 790 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 WDR45BQ5MNZ6 344 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 OVOS1Q6IE37 1185 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 SLC27A1Q6PCB7 646 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 ALDH16A1Q8IZ83 802 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 WDR36Q8NI36 951 aaKnown RBP14.06□□□□□ -0.16
LIMS1-215ENST00000544547 OLIG1Q8TAK6 271 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 TDRD1Q9BXT4 1180 aaKnown RBP14.06□□□□□ -0.16
LIMS1-215ENST00000544547 VPS28Q9UK41 221 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 TMCC3Q9ULS5 477 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 SOWAHBA6NEL2 793 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 ADM5C9JUS6 153 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 AP2A2O94973 939 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 IMPDH1P20839 514 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 ATN1P54259 1190 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-215ENST00000544547 LCP2Q13094 533 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 SNAP47Q5SQN1 464 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 DESI1Q6ICB0 168 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 SPATA19Q7Z5L4 167 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 CCDC28AQ8IWP9 274 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 LGI2Q8N0V4 545 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 TRNT1Q96Q11 434 aaKnown RBP14.06□□□□□ -0.16
LIMS1-215ENST00000544547 NXF3Q9H4D5 531 aaKnown RBP14.06□□□□□ -0.16
LIMS1-215ENST00000544547 UXTQ9UBK9 157 aaPredicted RBP14.06□□□□□ -0.16
LIMS1-215ENST00000544547 HSPB11Q9Y547 144 aa14.06□□□□□ -0.16
LIMS1-215ENST00000544547 ULK1O75385 1050 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 RPLP0P05388 317 aaKnown RBP14.05□□□□□ -0.16
LIMS1-215ENST00000544547 GSTM1P09488 218 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 MYCLP1P12525 358 aaPredicted RBP14.05□□□□□ -0.16
LIMS1-215ENST00000544547 FAM174BQ3ZCQ3 159 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 DDI2Q5TDH0 399 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 MZT2BQ6NZ67 158 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 RIOX2Q8IUF8 465 aa14.05□□□□□ -0.16
LIMS1-215ENST00000544547 LZTR1Q8N653 840 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms