RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 RFTN1Q14699 578 aaPredicted RBP16.66■□□□□ 0.26
USP28-208ENST00000540438 LAPTM4AQ15012 233 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 TBPL2Q6SJ96 375 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 TRIML2Q8N7C3 387 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 OR56A4Q8NGH8 313 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 FBXO30Q8TB52 745 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 PXYLP1Q8TE99 480 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 PBXIP1Q96AQ6 731 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 ATG10Q9H0Y0 220 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 WWOXQ9NZC7 414 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 FNIP2Q9P278 1114 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 TBC1D30Q9Y2I9 924 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 OR7A17O14581 309 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 RFPL2O75678 378 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 CHRM1P11229 460 aaPredicted RBP16.66■□□□□ 0.26
USP28-208ENST00000540438 CSF2RAP15509 400 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 SUOXP51687 545 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 KPNA1P52294 538 aaPredicted RBP16.66■□□□□ 0.26
USP28-208ENST00000540438 DDX39BQ13838 428 aaKnown RBP16.66■□□□□ 0.26
USP28-208ENST00000540438 GTF2H2Q13888 395 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 GTF2H2CQ6P1K8 395 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 SBSNQ6UWP8 590 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 SERPINA13PQ6UXR4 307 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 SLC43A3Q8NBI5 491 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 ADCY4Q8NFM4 1077 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 RHEBL1Q8TAI7 183 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 RIN3Q8TB24 985 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 PIH1D2Q8WWB5 315 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 FIG4Q92562 907 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 CCT7Q99832 543 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 RPF2Q9H7B2 306 aaKnown RBP16.66■□□□□ 0.26
USP28-208ENST00000540438 SUN2Q9UH99 717 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 PHF24Q9UPV7 400 aa16.66■□□□□ 0.26
USP28-208ENST00000540438 GAPDHSO14556 408 aaPredicted RBP16.65■□□□□ 0.26
USP28-208ENST00000540438 DFNA5O60443 496 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 ADSLP30566 484 aaPredicted RBP16.65■□□□□ 0.26
USP28-208ENST00000540438 CASP9P55211 416 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 NKAPQ8N5F7 415 aaKnown RBP16.65■□□□□ 0.26
USP28-208ENST00000540438 BBS2Q9BXC9 721 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 IKZF5Q9H5V7 419 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 EXD2Q9NVH0 621 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 U3KQV3 271 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 FRMPD3Q5JV73 1810 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 ANTXRLA6NF34 631 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 HTRA2O43464 458 aaPredicted RBP16.65■□□□□ 0.26
USP28-208ENST00000540438 PARNO95453 639 aaKnown RBP16.65■□□□□ 0.26
USP28-208ENST00000540438 ITPKAP23677 461 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 CRIPAKQ8N1N5 446 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 CHST14Q8NCH0 376 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 TCEAL4Q96EI5 215 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 LINC00597Q9H2U6 94 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 SMOXQ9NWM0 555 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 INSL5Q9Y5Q6 135 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 ATG2BQ96BY7 2078 aa16.65■□□□□ 0.26
USP28-208ENST00000540438 SYCE1LA8MT33 242 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 ZBBXA8MT70 800 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 LOC730098B7Z3J9 87 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 TAPBPO15533 448 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 ZNF23P17027 643 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 SLC7A1P30825 629 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 ZFP36L2P47974 494 aaKnown RBP16.64■□□□□ 0.26
USP28-208ENST00000540438 NFKB2Q00653 900 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 KLHDC10Q6PID8 442 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 CACUL1Q86Y37 369 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 TMEM125Q96AQ2 219 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 THUMPD3Q9BV44 507 aaKnown RBP16.64■□□□□ 0.26
USP28-208ENST00000540438 SLC6A13Q9NSD5 602 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 BCAP29Q9UHQ4 241 aa16.64■□□□□ 0.26
USP28-208ENST00000540438 TCRBV3S1A0A5B6 114 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 OR2AG2A6NM03 316 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 FGF4P08620 206 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 HSPA8P11142 646 aaKnown RBP16.64■□□□□ 0.25
USP28-208ENST00000540438 Q6ZVU0 165 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 VRK3Q8IV63 474 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 MARVELD2Q8N4S9 558 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 FIBCD1Q8N539 461 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 CYB5D2Q8WUJ1 264 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 BTBD9Q96Q07 612 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 MRPL9Q9BYD2 267 aaKnown RBP16.64■□□□□ 0.25
USP28-208ENST00000540438 Q9H521 79 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 SLC22A2O15244 555 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 SNAP29O95721 258 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 URODP06132 367 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 UROSP10746 265 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 IDO1P14902 403 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 ATP6V0D1P61421 351 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 NTHL1P78549 312 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 NFATC2Q13469 925 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 FAM174BQ3ZCQ3 159 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 ATP13A5Q4VNC0 1218 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 TMEM259Q4ZIN3 620 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 ARMC3Q5W041 872 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 LRRC66Q68CR7 880 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 TMEM25Q86YD3 366 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 LILRA3Q8N6C8 439 aaPredicted RBP16.64■□□□□ 0.25
USP28-208ENST00000540438 EGLN2Q96KS0 407 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 TSSK3Q96PN8 268 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 GPATCH1Q9BRR8 931 aaKnown RBP16.64■□□□□ 0.25
USP28-208ENST00000540438 ACTL8Q9H568 366 aa16.64■□□□□ 0.25
USP28-208ENST00000540438 HECAQ9UBI9 543 aaPredicted RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms