RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 TRIM11Q96F44 468 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 TTC25Q96NG3 672 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 IP6K3Q96PC2 410 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 VPS35Q96QK1 796 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 GPR63Q9BZJ6 419 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 UNKQ9C0B0 810 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 RUBCNLQ9H714 662 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 AGPAT4Q9NRZ5 378 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 LMBRD1Q9NUN5 540 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 PCMTD2Q9NV79 361 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 TMPRSS11EQ9UL52 423 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 BTRCQ9Y297 605 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 PDZD2O15018 2839 aa11.34□□□□□ -0.59
CLSTN3-209ENST00000539982 DDX3XO00571 662 aaKnown RBP eCLIP11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 POP7O75817 140 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 IPO13O94829 963 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 CD48P09326 243 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 PIRTP0C851 137 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 BPIP17213 487 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 CA5AP35218 305 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 HADHAP40939 763 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 SLC25A11Q02978 314 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 ADCY2Q08462 1091 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 ABRQ12979 859 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 MYBPC3Q14896 1274 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 NCF4Q15080 339 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 CCDC183Q5T5S1 534 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 HGSNATQ68CP4 663 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 ARMC6Q6NXE6 501 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 FAM198BQ6UWH4 519 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 Q6ZS92 163 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 ZNF571Q7Z3V5 609 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 SYTL1Q8IYJ3 562 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 ZADH2Q8N4Q0 377 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 NIPA2Q8N8Q9 360 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 GDAP1Q8TB36 358 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 LRRN4Q8WUT4 740 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 TM9SF4Q92544 642 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 INPP5DQ92835 1189 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 FER1L6-AS2Q96M78 137 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 TRIB3Q96RU7 358 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 DPH2Q9BQC3 489 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 NUP62CLQ9H1M0 184 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 HAUS4Q9H6D7 363 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 ZNF552Q9H707 407 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 ACTR5Q9H9F9 607 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 FANCEQ9HB96 536 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 SYTL2Q9HCH5 934 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 SOHLH2Q9NX45 425 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 PSMD13Q9UNM6 376 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 NTNG1Q9Y2I2 539 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 ZNF711Q9Y462 761 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 PCDHGA10Q9Y5H3 936 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 DNMT3AQ9Y6K1 912 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 CROCCQ5TZA2 2017 aa11.33□□□□□ -0.6
CLSTN3-209ENST00000539982 PIKFYVEQ9Y2I7 2098 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 DIDO1Q9BTC0 2240 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 PCSK5Q92824 1860 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 OR6C74A6NCV1 312 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 LCA5LO95447 670 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 IGHEP01854 428 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 SLC4A1P02730 911 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 MTHFD1P11586 935 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 MX2P20592 715 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 OTX2P32243 289 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 ARSEP51690 589 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 KPNA2P52292 529 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 DPYSL3Q14195 570 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 SSPNQ14714 243 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 SKOR2Q2VWA4 1001 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 ATP13A5Q4VNC0 1218 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 DCAF10Q5QP82 559 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 METRNLQ641Q3 311 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 FBXO38Q6PIJ6 1188 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 FAM83HQ6ZRV2 1179 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 CUZD1Q86UP6 607 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 KCNMB4Q86W47 210 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 MCEMP1Q8IX19 187 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 GALNT16Q8N428 558 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 CNTD1Q8N815 330 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 CLEC1AQ8NC01 280 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 CCNYQ8ND76 341 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 OR1L3Q8NH93 324 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 SRPK1Q96SB4 655 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 DHRS4Q9BTZ2 278 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 TLR10Q9BXR5 811 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 ISCUQ9H1K1 167 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 C1GALT1Q9NS00 363 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 IMP3Q9NV31 184 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 IP6K2Q9UHH9 426 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 SLC24A2Q9UI40 661 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 SERTAD3Q9UJW9 196 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 PADI2Q9Y2J8 665 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 SETD2Q9BYW2 2564 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 SPTBP11277 2137 aa11.32□□□□□ -0.6
CLSTN3-209ENST00000539982 F8P00451 2351 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 HEATR9A2RTY3 570 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 SLC9B1P1A6NJY1 282 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 LRRC53A6NM62 1247 aa11.31□□□□□ -0.6
CLSTN3-209ENST00000539982 C9J4A7 227 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms