RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ZNF876PQ49A33 203 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 KRTCAP3Q53RY4 240 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 RAB41Q5JT25 222 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 ENOSF1Q7L5Y1 443 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 SDCCAG8Q86SQ7 713 aaPredicted RBP2.65□□□□□ -1.99
CD44-238ENST00000534296 TTC30BQ8N4P2 665 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 STPG4Q8N801 248 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 AVL9Q8NBF6 648 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 ZNF248Q8NDW4 579 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 GSDMBQ8TAX9 411 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 SLC44A1Q8WWI5 657 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 RHBDF1Q96CC6 855 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 OXNAD1Q96HP4 312 aaPredicted RBP2.65□□□□□ -1.99
CD44-238ENST00000534296 F2RL3Q96RI0 385 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 SERINC2Q96SA4 455 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 KIFC3Q9BVG8 833 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 MXD3Q9BW11 206 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 RBM4Q9BWF3 364 aaKnown RBP2.65□□□□□ -1.99
CD44-238ENST00000534296 MOV10L1Q9BXT6 1211 aaKnown RBP2.65□□□□□ -1.99
CD44-238ENST00000534296 RTN4RQ9BZR6 473 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 PIGMQ9H3S5 423 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 PDZD7Q9H5P4 517 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 EPB41L5Q9HCM4 733 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 GIMAP4Q9NUV9 329 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 SUCLA2Q9P2R7 463 aaPredicted RBP2.65□□□□□ -1.99
CD44-238ENST00000534296 NRBP1Q9UHY1 535 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 PADI3Q9ULW8 664 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 CLIC4Q9Y696 253 aa2.65□□□□□ -1.99
CD44-238ENST00000534296 TCF20Q9UGU0 1960 aaKnown RBP2.65□□□□□ -1.99
CD44-238ENST00000534296 A0A1W2PPI3 338 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 ERVV-2B6SEH9 535 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 TIMM44O43615 452 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 AHCYL1O43865 530 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 PRKNO60260 465 aaPredicted RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 EIF5BO60841 1220 aaKnown RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 BMP10O95393 424 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 GH2P01242 217 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 ABCB1P08183 1280 aaPredicted RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 GABRB1P18505 474 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 GNAZP19086 355 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 MAPK4P31152 587 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 TIMP3P35625 211 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 CRIP2P52943 208 aaPredicted RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 UBXN2AP68543 259 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 MRPS5P82675 430 aaKnown RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 RPL24P83731 157 aaKnown RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 KIR2DS3Q14952 304 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 MEP1AQ16819 746 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 ASTE1Q2TB18 679 aaPredicted RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 SOWAHCQ53LP3 525 aaPredicted RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 IGSF11Q5DX21 431 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 BMP2KLQ5H9B9 411 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 KIAA0930Q6ICG6 404 aaPredicted RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 JADE1Q6IE81 842 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 DNAAF5Q86Y56 855 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 MCEMP1Q8IX19 187 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 C1orf52Q8N6N3 182 aaKnown RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 FAM76AQ8TAV0 307 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 SNRNP27Q8WVK2 155 aaKnown RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 ALG14Q96F25 216 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 WBP1Q96G27 269 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 SMC6Q96SB8 1091 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 GAD1Q99259 594 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 PCYT2Q99447 389 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 SLF1Q9BQI6 1058 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 MRPL1Q9BYD6 325 aaKnown RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 RAD21L1Q9H4I0 556 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 BICC1Q9H694 974 aaKnown RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 ZBTB20Q9HC78 741 aaPredicted RBP2.64□□□□□ -1.99
CD44-238ENST00000534296 ECHDC1Q9NTX5 307 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 SETD4Q9NVD3 440 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 MORF4L1Q9UBU8 362 aa2.64□□□□□ -1.99
CD44-238ENST00000534296 A0A1W2PQF6 199 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 CDRT15L2A8MXV6 281 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 SMIM1B2RUZ4 78 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 SMAD9O15198 467 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 CTSVO60911 334 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 MITFO75030 526 aaPredicted RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 BAG4O95429 457 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 NR3C1P04150 777 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 ICAM1P05362 532 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 KRT19P08727 400 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 TM4SF1P30408 202 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 GARSP41250 739 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 RAD52P43351 418 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 CAPZA2P47755 286 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 ARCN1P48444 511 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 VEGFCP49767 419 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 GPR143P51810 404 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 TMF1P82094 1093 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 PLA2G7Q13093 441 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 PPIGQ13427 754 aaKnown RBP eCLIP2.63□□□□□ -1.99
CD44-238ENST00000534296 MVPQ14764 893 aaKnown RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 PSMD6Q15008 389 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 DUOXA1Q1HG43 343 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 LRIF1Q5T3J3 769 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 NAA16Q6N069 864 aaPredicted RBP2.63□□□□□ -1.99
CD44-238ENST00000534296 FBXL22Q6P050 247 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 ARHGAP11AQ6P4F7 1023 aa2.63□□□□□ -1.99
CD44-238ENST00000534296 RAD9BQ6WBX8 426 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms