RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 RALGAPA1Q6GYQ0 2036 aa3.94□□□□□ -1.78
CD44-235ENST00000532339 ZNFX1Q9P2E3 1918 aaKnown RBP3.93□□□□□ -1.78
CD44-235ENST00000532339 TRIP12Q14669 1992 aaPredicted RBP3.93□□□□□ -1.78
CD44-235ENST00000532339 GOLGA6L10A0A0M3HER8 536 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 A0A1B0GUV1 79 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 GAGE10A6NGK3 116 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 SMTNL1A8MU46 457 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 K7ENM7 598 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 TNFSF14O43557 240 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 TIMM44O43615 452 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 LDB2O43679 373 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 LDB3O75112 727 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 SOX30O94993 753 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 PPP1R3DO95685 299 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 GH2P01242 217 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 FCGR2AP12318 317 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 ENO3P13929 434 aaPredicted RBP3.93□□□□□ -1.78
CD44-235ENST00000532339 NAGAP17050 411 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 CHMP24386 653 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 HNF1BP35680 557 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 PAFAH1B1P43034 410 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 GPD2P43304 727 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 RPS9P46781 194 aaKnown RBP3.93□□□□□ -1.78
CD44-235ENST00000532339 AMTP48728 403 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 PDLIM4P50479 330 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 CLCNKBP51801 687 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 CDH12P55289 794 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 NEXNQ0ZGT2 675 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 HNF4GQ14541 408 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 PLCB4Q15147 1175 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 PTPN14Q15678 1187 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 TBCEQ15813 527 aaPredicted RBP3.93□□□□□ -1.78
CD44-235ENST00000532339 MEA1Q16626 185 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 CCDC57Q2TAC2 916 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 ZNF766Q5HY98 468 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 LCE1EQ5T753 118 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 SNX30Q5VWJ9 437 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 C9orf57Q5W0N0 161 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 FAM205BPQ63HN1 556 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 ITPRIPL1Q6GPH6 555 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 MTFR2Q6P444 385 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 SLC22A25Q6T423 547 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 C16orf82Q7Z2V1 217 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 GALNT7Q86SF2 657 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 ADGRG6Q86SQ4 1221 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 MON1AQ86VX9 555 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 ZDHHC23Q8IYP9 409 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 VPS52Q8N1B4 723 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 FAM133AQ8N9E0 248 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 ZCCHC10Q8TBK6 192 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 CREB3L4Q8TEY5 395 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 C2CD4CQ8TF44 421 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 FAM216AQ8WUB2 273 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 HDAC7Q8WUI4 952 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 FAR1Q8WVX9 515 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 NR4A3Q92570 626 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 SEPT8Q92599 483 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 CLDN23Q96B33 292 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 WBP1Q96G27 269 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 SLITRK1Q96PX8 696 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 GFM1Q96RP9 751 aaKnown RBP3.93□□□□□ -1.78
CD44-235ENST00000532339 MYADMQ96S97 322 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.93□□□□□ -1.78
CD44-235ENST00000532339 EDEM2Q9BV94 578 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 DNAJC18Q9H819 358 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 ZNF556Q9HAH1 456 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 BRF2Q9HAW0 419 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 KRT84Q9NSB2 600 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 MDFICQ9P1T7 246 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 CAMK2AQ9UQM7 478 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 PCDHGA5Q9Y5G8 931 aa3.93□□□□□ -1.78
CD44-235ENST00000532339 F8P00451 2351 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 AHCTF1Q8WYP5 2266 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 LAMA1P25391 3075 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 GREB1Q4ZG55 1949 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 GPR75-ASB3A0A0A6YYF3 556 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 HSPB6O14558 160 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 DOK2O60496 412 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 CCNT1O60563 726 aaKnown RBP3.92□□□□□ -1.78
CD44-235ENST00000532339 ZBED4O75132 1171 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 FLOT1O75955 427 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 ZNF432O94892 652 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 SCGB1D1O95968 90 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 CLEC3BP05452 202 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 CYP4B1P13584 511 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 RPS6KA3P51812 740 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 DRG2P55039 364 aaKnown RBP3.92□□□□□ -1.78
CD44-235ENST00000532339 ERVFC1-1P60608 527 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 GOLGA8FQ08AF8 430 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 BYSLQ13895 437 aaKnown RBP3.92□□□□□ -1.78
CD44-235ENST00000532339 NAA25Q14CX7 972 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 KRT24Q2M2I5 525 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 ZNF284Q2VY69 593 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 NAPEPLDQ6IQ20 393 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 CCNI2Q6ZMN8 369 aaPredicted RBP3.92□□□□□ -1.78
CD44-235ENST00000532339 RNF144BQ7Z419 303 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 PXKQ7Z7A4 578 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 BRSK2Q8IWQ3 736 aa3.92□□□□□ -1.78
CD44-235ENST00000532339 DIS3L2Q8IYB7 885 aaKnown RBP3.92□□□□□ -1.78
CD44-235ENST00000532339 CHCHD4Q8N4Q1 142 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms