RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 ZDHHC1Q8WTX9 485 aa20.38■□□□□ 0.85
CD44-222ENST00000526025 CNDP2Q96KP4 475 aaKnown RBP20.38■□□□□ 0.85
CD44-222ENST00000526025 APOLD1Q96LR9 279 aa20.38■□□□□ 0.85
CD44-222ENST00000526025 PANX3Q96QZ0 392 aa20.38■□□□□ 0.85
CD44-222ENST00000526025 DPEP2Q9H4A9 486 aa20.38■□□□□ 0.85
CD44-222ENST00000526025 LRRC4CQ9HCJ2 640 aa20.38■□□□□ 0.85
CD44-222ENST00000526025 PPANQ9NQ55 473 aaKnown RBP20.38■□□□□ 0.85
CD44-222ENST00000526025 TBC1D29Q9UFV1 150 aa20.38■□□□□ 0.85
CD44-222ENST00000526025 CORO1CQ9ULV4 474 aaPredicted RBP20.38■□□□□ 0.85
CD44-222ENST00000526025 LY6G6EA0A0G2JKS1 128 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 KIR2DS5A0A0G2JLQ3 304 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 A0A0G2JNG1 304 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 TCRBV9S1A1TA0A576 114 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 UBA6A0AVT1 1052 aaPredicted RBP20.37■□□□□ 0.85
CD44-222ENST00000526025 KIR2DS3K7RE56 304 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 LIN7AO14910 233 aaPredicted RBP20.37■□□□□ 0.85
CD44-222ENST00000526025 KPNA5O15131 536 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 SSTR1P30872 391 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 STX2P32856 288 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 KIR2DS5Q14953 304 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 NR0B2Q15466 257 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 TCEA2Q15560 299 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 C14orf28Q4W4Y0 310 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 PTRHD1Q6GMV3 140 aaKnown RBP20.37■□□□□ 0.85
CD44-222ENST00000526025 SLC35F3Q8IY50 421 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 KYQ8NBH2 561 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 CDKL2Q92772 493 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 CAMK1GQ96NX5 476 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 OSGEPL1Q9H4B0 414 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 ANKZF1Q9H8Y5 726 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 ZFATQ9P243 1243 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 U3KQA8 63 aa20.37■□□□□ 0.85
CD44-222ENST00000526025 B4DGG1 531 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 PKMP14618 531 aaKnown RBP20.36■□□□□ 0.85
CD44-222ENST00000526025 CKMT2P17540 419 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 ACP1P24666 158 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 EIF3BP55884 814 aaKnown RBP20.36■□□□□ 0.85
CD44-222ENST00000526025 NAB1Q13506 487 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 NFE2L1Q14494 772 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 PUM1Q14671 1186 aaKnown RBP eCLIP20.36■□□□□ 0.85
CD44-222ENST00000526025 SMAD1Q15797 465 aaKnown RBP20.36■□□□□ 0.85
CD44-222ENST00000526025 CTSL3PQ5NE16 218 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 IYDQ6PHW0 289 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 XKR5Q6UX68 686 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 FAM83HQ6ZRV2 1179 aaPredicted RBP20.36■□□□□ 0.85
CD44-222ENST00000526025 NAGSQ8N159 534 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 SFRP1Q8N474 314 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 DEFB124Q8NES8 71 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 UBXN4Q92575 508 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 NAT6Q93015 286 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 FUT8Q9BYC5 575 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 COG4Q9H9E3 785 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 FBXO6Q9NRD1 293 aaPredicted RBP20.36■□□□□ 0.85
CD44-222ENST00000526025 KLHL42Q9P2K6 505 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 DNAJC16Q9Y2G8 782 aa20.36■□□□□ 0.85
CD44-222ENST00000526025 ASXL3Q9C0F0 2248 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 RP1P56715 2156 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 EME2A4GXA9 379 aaPredicted RBP20.35■□□□□ 0.85
CD44-222ENST00000526025 FAM159BA6NKW6 160 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 C1QAP02745 245 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 PNLIPP16233 465 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 PBLDP30039 288 aaPredicted RBP20.35■□□□□ 0.85
CD44-222ENST00000526025 PHBP35232 272 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 FASLGP48023 281 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 MPP1Q00013 466 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 ILKQ13418 452 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 TRIP6Q15654 476 aaKnown RBP20.35■□□□□ 0.85
CD44-222ENST00000526025 ZNF789Q5FWF6 425 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 NAT14Q8WUY8 206 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 ASZ1Q8WWH4 475 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 KCNJ9Q92806 393 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 CCDC68Q9H2F9 335 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 CDC42EP4Q9H3Q1 356 aaKnown RBP20.35■□□□□ 0.85
CD44-222ENST00000526025 LATS2Q9NRM7 1088 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 NINJ2Q9NZG7 142 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 CRYL1Q9Y2S2 319 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 PCDHGA1Q9Y5H4 931 aa20.35■□□□□ 0.85
CD44-222ENST00000526025 SLC5A10A0PJK1 596 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 PDZK1P1A8MUH7 402 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 NUDT21O43809 227 aaKnown RBP20.34■□□□□ 0.85
CD44-222ENST00000526025 HAUS5O94927 633 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 EML2O95834 649 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 AHSGP02765 367 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 GP1BAP07359 652 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 CDK4P11802 303 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 XRCC1P18887 633 aaPredicted RBP20.34■□□□□ 0.85
CD44-222ENST00000526025 CD9P21926 228 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 MCM3P25205 808 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 GABRB3P28472 473 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 FMO4P31512 558 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 HALP42357 657 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 CD151P48509 253 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 DAB2P98082 770 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 WDR93Q6P2C0 686 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 CFAP206Q8IYR0 622 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 MAPK15Q8TD08 544 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 ELMO1Q92556 727 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 SARS2Q9NP81 518 aaKnown RBP20.34■□□□□ 0.85
CD44-222ENST00000526025 PRDM8Q9NQV8 689 aa20.34■□□□□ 0.85
CD44-222ENST00000526025 SIRPGQ9P1W8 387 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms