RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 MUC20Q8N307 709 aaPredicted RBP3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 GBGT1Q8N5D6 347 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZBTB8BQ8NAP8 495 aaPredicted RBP3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 RDM1Q8NG50 284 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 EXD1Q8NHP7 514 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 FAM81BQ96LP2 452 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZNF830Q96NB3 372 aaPredicted RBP3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 DUX5Q96PT3 197 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 WACQ9BTA9 647 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 KRTAP9-8Q9BYQ0 159 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 GPR88Q9GZN0 384 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 RAB6CQ9H0N0 254 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 CSTL1Q9H114 145 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 ERVMER34-1Q9H9K5 563 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 HHATLQ9HCP6 504 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZCCHC17Q9NP64 241 aaKnown RBP3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 PIH1D3Q9NQM4 214 aaKnown RBP3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 OLAHQ9NV23 265 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 SELENONQ9NZV5 590 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 C5AR2Q9P296 337 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 IL17BQ9UHF5 180 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 OSGIN1Q9UJX0 560 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 CCL27Q9Y4X3 112 aa3.92□□□□□ -1.78
HMGB1P28-201ENST00000507778 SAA2-SAA4A0A096LPE2 208 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 TSPY2A6NKD2 308 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 HEPACAM2A8MVW5 462 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 DVL1O14640 695 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 EIF3DO15371 548 aaKnown RBP eCLIP3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 TSPAN1O60635 241 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 TADA2AO75478 443 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 TRUB2O95900 331 aaKnown RBP3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 TSPY3P0CV98 308 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 TSPY8P0CW00 308 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 CDH1P12830 882 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 HLA-DOBP13765 273 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 GM2AP17900 193 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 ARCN1P48444 511 aaKnown RBP3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 RAD23AP54725 363 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 CDK3Q00526 305 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 TSPY1Q01534 308 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 RUNX1T1Q06455 604 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 PLA2G7Q13093 441 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZBTB17Q13105 803 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 NR1D2Q14995 579 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 GCNT6Q5T4J0 391 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 C6orf163Q5TEZ5 329 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 UNQ6126/PRO20091Q6UXV3 157 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 RAD9BQ6WBX8 426 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 CHST3Q7LGC8 479 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 C16orf82Q7Z2V1 217 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 IQCHQ86VS3 1027 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZNF441Q8N8Z8 693 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 PAPD5Q8NDF8 572 aaKnown RBP3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 OR6J1Q8NGC5 347 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 BBS10Q8TAM1 723 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 SECISBP2LQ93073 1101 aaKnown RBP3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 VPS33AQ96AX1 596 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 FAM84BQ96KN1 310 aaPredicted RBP3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 CFAP57Q96MR6 1250 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 TTC14Q96N46 770 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZMAT2Q96NC0 199 aaKnown RBP3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 ZNF582Q96NG8 517 aaPredicted RBP3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 MS4A10Q96PG2 267 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 MEIS3Q99687 375 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 C16orf70Q9BSU1 422 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 C6orf106Q9H6K1 298 aaPredicted RBP3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 OPA3Q9H6K4 179 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 CD93Q9NPY3 652 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 EQTNQ9NQ60 294 aa3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 RALYQ9UKM9 306 aaKnown RBP3.91□□□□□ -1.78
HMGB1P28-201ENST00000507778 IGHV4OR15-8A0A075B7B6 117 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 A0A0B4J293 547 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 EDDM13A0A1B0GTR0 161 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 URADA6NGE7 173 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 SLC28A2O43868 658 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 WISP2O76076 250 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 PPP1R3DO95685 299 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 LINGO3P0C6S8 592 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 ZNF23P17027 643 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 MC5RP33032 325 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 TERF1P54274 439 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 MLLT10P55197 1068 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 RALGDSQ12967 914 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 KEAP1Q14145 624 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 ARMC4Q5T2S8 1044 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 CST9LP1Q5W188 147 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 CCDC186Q7Z3E2 898 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 ARMC9Q7Z3E5 817 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 TTC30BQ8N4P2 665 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 LNX1Q8TBB1 728 aaPredicted RBP3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 SMPDL3BQ92485 455 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 SEMA4DQ92854 862 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 NXNL1Q96CM4 212 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 HDAC11Q96DB2 347 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 MTERF3Q96E29 417 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 ARSGQ96EG1 525 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 IGSF21Q96ID5 467 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 MARK4Q96L34 752 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 ANKRD2Q9GZV1 360 aa3.9□□□□□ -1.79
HMGB1P28-201ENST00000507778 SLA2Q9H6Q3 261 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms