RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 KRT35Q92764 455 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 RBM41Q96IZ5 413 aaKnown RBP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 SLC41A2Q96JW4 573 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 MAP3K3Q99759 626 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 GORASP1Q9BQQ3 440 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 HEMGNQ9BXL5 484 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 WWP1Q9H0M0 922 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 GBA3Q9H227 469 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 PDE7BQ9NP56 450 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 SEMA5BQ9P283 1151 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 FAM8A1Q9UBU6 413 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 FKBPLQ9UIM3 349 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 TRHDEQ9UKU6 1024 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 RARRES3Q9UL19 164 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 TP53TG5Q9Y2B4 290 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 ARL5AQ9Y689 179 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 KCNMB2Q9Y691 235 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 CFAP20Q9Y6A4 193 aaKnown RBP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 DNMT3AQ9Y6K1 912 aaPredicted RBP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 CDC14CA4D256 554 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 OR5K3A6NET4 321 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 APOC4-APOC2K7ER74 178 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 ANXA9O76027 345 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 APOC2P02655 101 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 MT-ND3P03897 115 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 CCNYL3P0C7X3 344 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 EBLN1P0CF75 366 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 FOLR1P15328 257 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 NR1D1P20393 614 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 RBL1P28749 1068 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 FOXK1P85037 733 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 IGFBP7Q16270 282 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 LONRF2Q1L5Z9 754 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 SKOR2Q2VWA4 1001 aaPredicted RBP11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 DNTTIP2Q5QJE6 756 aaKnown RBP11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 METRNLQ641Q3 311 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 PWWP2BQ6NUJ5 590 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 C11orf63Q6NUN7 778 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 KLHL35Q6PF15 583 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 CERS6Q6ZMG9 384 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 TC2NQ8N9U0 490 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 ZNF398Q8TD17 642 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 NAT14Q8WUY8 206 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 C12orf66Q96MD2 445 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 INSM2Q96T92 566 aaPredicted RBP11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 APOL2Q9BQE5 337 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 TWSG1Q9GZX9 223 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 LHX9Q9NQ69 397 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 KCND3Q9UK17 655 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 PADI1Q9ULC6 663 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 POLHQ9Y253 713 aa11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 UBR5O95071 2799 aaPredicted RBP11.28□□□□□ -0.6
HMGCS1-204ENST00000507293 UBA6A0AVT1 1052 aaPredicted RBP11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 MGAT4DA6NG13 374 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 TLCD2A6NGC4 264 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 MKRN2OSH3BPM6 223 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 K7EM74 188 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 CREG1O75629 220 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 SRP72O76094 671 aaKnown RBP11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 LCA5LO95447 670 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 SLC35G4P0C7Q5 338 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 LPOP22079 712 aaPredicted RBP11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 PSMB4P28070 264 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 ARL4DP49703 201 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 ACY1Q03154 408 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 OLIG2Q13516 323 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 TAF1AQ15573 450 aaPredicted RBP11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 CCDC181Q5TID7 509 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 ITPRIPL1Q6GPH6 555 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 OOSP2Q86WS3 158 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 KMT5CQ86Y97 462 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 SPDYE1Q8NFV5 336 aaPredicted RBP11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 OR4K2Q8NGD2 314 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 ZNF514Q96K75 400 aaPredicted RBP11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 FCRL4Q96PJ5 515 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 RUFY1Q96T51 708 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 CD180Q99467 661 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 ASB8Q9H765 288 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 FGF21Q9NSA1 209 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 HRASLS2Q9NWW9 162 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 SLC24A2Q9UI40 661 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 PCDHGA6Q9Y5G7 932 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 PCDHA13Q9Y5I0 950 aa11.27□□□□□ -0.61
HMGCS1-204ENST00000507293 PIKFYVEQ9Y2I7 2098 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 MACROD2A1Z1Q3 448 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 PIPSLA2A3N6 862 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 OR6C74A6NCV1 312 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 C2orf81A6NN90 581 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 C21orf140B9A014 251 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 RFPL1O75677 317 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 NTRK1P04629 796 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 ADRA1AP35348 466 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 ARCN1P48444 511 aaKnown RBP11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 PMS2P54278 862 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 OTUD4Q01804 1114 aaKnown RBP11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 KLRB1Q12918 225 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 SPA17Q15506 151 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 GPR19Q15760 415 aa11.26□□□□□ -0.61
HMGCS1-204ENST00000507293 BCL7AQ4VC05 210 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms