RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 KDM1BQ8NB78 822 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ZBTB34Q8NCN2 500 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 RP9Q8TA86 221 aaKnown RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 PPP1R35Q8TAP8 253 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 UCMAQ8WVF2 138 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 KBTBD7Q8WVZ9 684 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 POMGNT1Q8WZA1 660 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 RAD54LQ92698 747 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 GOLGA1Q92805 767 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 SYAP1Q96A49 352 aaPredicted RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 DAZAP1Q96EP5 407 aaKnown RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 SLC22A12Q96S37 553 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 FIZ1Q96SL8 496 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 REEP2Q9BRK0 252 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 UBXN6Q9BZV1 441 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 DCLK3Q9C098 648 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 MS4A7Q9GZW8 240 aaPredicted RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 CDH19Q9H159 772 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 ABCG4Q9H172 646 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 TNMDQ9H2S6 317 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 C6orf106Q9H6K1 298 aaPredicted RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 RBAKQ9NYW8 714 aaPredicted RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 LSM7Q9UK45 103 aaKnown RBP4.02□□□□□ -1.77
USP54-217ENST00000498213 ENTPD4Q9Y227 616 aa4.02□□□□□ -1.77
USP54-217ENST00000498213 CEP192Q8TEP8 1941 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 NOTCH1P46531 2555 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 CGB1A6NKQ9 187 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 WASH3PC4AMC7 463 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 H3BQV1 296 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 PSMD9O00233 223 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 TRIM38O00635 465 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 IKBKBO14920 756 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 JAK2O60674 1132 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 MAGEC1O60732 1142 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 SDC3O75056 442 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 RFPL1O75677 317 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 WNT1P04628 370 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 TMEM191BP0C7N4 346 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 PRR35P0CG20 571 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 KELP23276 732 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 ACP1P24666 158 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 YWHAQP27348 245 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 EPHA8P29322 1005 aaPredicted RBP4.01□□□□□ -1.77
USP54-217ENST00000498213 EPHB2P29323 1055 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 SLC7A1P30825 629 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 SLC5A2P31639 672 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 TPMTP51580 245 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 KRTAP10-9P60411 292 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 TUBA4AP68366 448 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 COG7P83436 770 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 OVGP1Q12889 678 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 ANO6Q4KMQ2 910 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 PLA1AQ53H76 456 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 MTX3Q5HYI7 312 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 C10orf76Q5T2E6 689 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 MPP7Q5T2T1 576 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 HECTD3Q5T447 861 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 SERPINA13PQ6UXR4 307 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 TRIM72Q6ZMU5 477 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 Q71RC1 249 aaPredicted RBP4.01□□□□□ -1.77
USP54-217ENST00000498213 ZSCAN30Q86W11 494 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 GPBP1Q86WP2 473 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 CCDC65Q8IXS2 484 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 SPARTQ8N0X7 666 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 GPD1LQ8N335 351 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 CSGALNACT2Q8N6G5 542 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 TERB1Q8NA31 727 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 PNLDC1Q8NA58 520 aaKnown RBP4.01□□□□□ -1.77
USP54-217ENST00000498213 TEX19Q8NA77 164 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 GLIS1Q8NBF1 620 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 RASSF8Q8NHQ8 419 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 SLC35G2Q8TBE7 412 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 LRRC15Q8TF66 581 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 ARRDC3Q96B67 414 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 SMARCD1Q96GM5 515 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 HPDLQ96IR7 371 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 ZBTB45Q96K62 511 aaPredicted RBP4.01□□□□□ -1.77
USP54-217ENST00000498213 TAAR9Q96RI9 348 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 SYT15Q9BQS2 421 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 NUP58Q9BVL2 599 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 FSD1LQ9BXM9 530 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 TRIM54Q9BYV2 358 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 CXorf36Q9H7Y0 433 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 MRPL44Q9H9J2 332 aaKnown RBP4.01□□□□□ -1.77
USP54-217ENST00000498213 ZMAT3Q9HA38 289 aaKnown RBP4.01□□□□□ -1.77
USP54-217ENST00000498213 CSNK1G1Q9HCP0 422 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 DMAP1Q9NPF5 467 aaPredicted RBP4.01□□□□□ -1.77
USP54-217ENST00000498213 ITM2CQ9NQX7 267 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 TLR8Q9NR97 1041 aaKnown RBP4.01□□□□□ -1.77
USP54-217ENST00000498213 GJB4Q9NTQ9 266 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 CLIC5Q9NZA1 410 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.01□□□□□ -1.77
USP54-217ENST00000498213 L1RE1Q9UN81 338 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 MAGED2Q9UNF1 606 aaPredicted RBP4.01□□□□□ -1.77
USP54-217ENST00000498213 SNX9Q9Y5X1 595 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 ESPL1Q14674 2120 aa4.01□□□□□ -1.77
USP54-217ENST00000498213 A0A087WWL8 130 aa4□□□□□ -1.77
USP54-217ENST00000498213 A0A1B0GVM2 712 aa4□□□□□ -1.77
USP54-217ENST00000498213 PVALEFA0A1B0GWK0 134 aa4□□□□□ -1.77
USP54-217ENST00000498213 VWA3AA6NCI4 1184 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms