RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 GIPC3Q8TF64 312 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 SCAMP4Q969E2 229 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 ZFRQ96KR1 1074 aaKnown RBP13.27□□□□□ -0.29
GPC1-209ENST00000495100 LEF1Q9UJU2 399 aaPredicted RBP13.27□□□□□ -0.29
GPC1-209ENST00000495100 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.27□□□□□ -0.29
GPC1-209ENST00000495100 PCDHB8Q9UN66 801 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 ATP11BQ9Y2G3 1177 aa13.27□□□□□ -0.29
GPC1-209ENST00000495100 HAS3O00219 553 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 PRMT5O14744 637 aaPredicted RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 VILLO15195 856 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 ESRRBO95718 433 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 KLKB1P03952 638 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 ATXN1LP0C7T5 689 aaKnown RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 ITGALP20701 1170 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 GABRR2P28476 465 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 FMO3P31513 532 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 HSPA13P48723 471 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 CBX2Q14781 532 aaPredicted RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 PCBP1Q15365 356 aaKnown RBP eCLIP13.26□□□□□ -0.29
GPC1-209ENST00000495100 CYP20A1Q6UW02 462 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 LARP4Q71RC2 724 aaKnown RBP eCLIP13.26□□□□□ -0.29
GPC1-209ENST00000495100 CMTM8Q8IZV2 173 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 TMCO5AQ8N6Q1 288 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 PCSK9Q8NBP7 692 aaKnown RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 OR2T11Q8NH01 316 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 TMBIM1Q969X1 311 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 FUBP1Q96AE4 644 aaKnown RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 C12orf43Q96C57 262 aaKnown RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 PRICKLE1Q96MT3 831 aaPredicted RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 BDH2Q9BUT1 245 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 C9orf16Q9BUW7 83 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 RPF2Q9H7B2 306 aaKnown RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 ZFYVE1Q9HBF4 777 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 SPASTQ9UBP0 616 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 EIF3LQ9Y262 564 aaKnown RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 CPQQ9Y646 472 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 LOC730098B7Z3J9 87 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 WDR47O94967 919 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 MMP2P08253 660 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 SMIM18P0DKX4 95 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 SOAT1P35610 550 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 RECQLP46063 649 aaPredicted RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 IDH2P48735 452 aaKnown RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 DCTN2Q13561 401 aaKnown RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 GTF2H2Q13888 395 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 FAM98BQ52LJ0 330 aaKnown RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 GTF2H2CQ6P1K8 395 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 ZNF555Q8NEP9 628 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 SPPL2AQ8TCT8 520 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 UTP15Q8TED0 518 aaKnown RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 SLCO4A1Q96BD0 722 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 EGLN2Q96KS0 407 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 CORO1BQ9BR76 489 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 PNMA8CA0A1B0GUJ8 204 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 TRIM24O15164 1050 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 TBC1D4O60343 1298 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 ZNF26P17031 533 aaPredicted RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 CCT8P50990 548 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 APCDD1Q8J025 514 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 FIBCD1Q8N539 461 aa13.26□□□□□ -0.29
GPC1-209ENST00000495100 TMEM102Q8N9M5 508 aaPredicted RBP13.26□□□□□ -0.29
GPC1-209ENST00000495100 A0A087WXM4 84 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 TNFRSF10BO14763 440 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 RAD51BO15315 384 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 ZNF7P17097 686 aaPredicted RBP13.25□□□□□ -0.29
GPC1-209ENST00000495100 GPX3P22352 226 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 CHRNA6Q15825 494 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 FAM91A1Q658Y4 838 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 TBPL2Q6SJ96 375 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 UPF1Q92900 1129 aaKnown RBP eCLIP13.25□□□□□ -0.29
GPC1-209ENST00000495100 DEFB118Q96PH6 123 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 DPH2Q9BQC3 489 aaPredicted RBP13.25□□□□□ -0.29
GPC1-209ENST00000495100 MEAF6Q9HAF1 191 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 CSNK1G1Q9HCP0 422 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 SCML2Q9UQR0 700 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 DMTF1Q9Y222 760 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 TTC36A6NLP5 189 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 TARM1B6A8C7 271 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 BOLA2-SMG1P6H3BVE0 249 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 ASLP04424 464 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 ALOX15P16050 662 aaPredicted RBP13.25□□□□□ -0.29
GPC1-209ENST00000495100 TTPAP49638 278 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 PARP15Q460N3 678 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 AASDHQ4L235 1098 aaPredicted RBP13.25□□□□□ -0.29
GPC1-209ENST00000495100 CACHD1Q5VU97 1274 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 NECAB2Q7Z6G3 386 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 MICU2Q8IYU8 434 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 UMODL1-AS1Q8N2C9 162 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 SMPD3Q9NY59 655 aaPredicted RBP13.25□□□□□ -0.29
GPC1-209ENST00000495100 LOC100506127A0A0U1RQW1 187 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 PRSS51A0A1B0GVH4 220 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 PRAMEF11O60813 436 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 MITFO75030 526 aaPredicted RBP13.25□□□□□ -0.29
GPC1-209ENST00000495100 DEAF1O75398 565 aaPredicted RBP13.25□□□□□ -0.29
GPC1-209ENST00000495100 MTHFD2P13995 350 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 PMS2P3Q13401 168 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 GALNT18Q6P9A2 607 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 LRRC8DQ7L1W4 858 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 ADCK2Q7Z695 626 aa13.25□□□□□ -0.29
GPC1-209ENST00000495100 TRIM74Q86UV6 250 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms