RNA–Protein interactions for RNA: ENST00000494945.1

PKP4-215, Transcript of plakophilin 4, human

TSL 5

Gene PKP4, Length 522 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKP4-215	ENST00000494945	COL6A3	P12111	3177 aa		10.85	□□□□□ -0.67
PKP4-215	ENST00000494945	PI4KA	P42356	2102 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	C17orf113	A0A1B0GUU1	675 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	KLHL33	A6NCF5	533 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	CACNB4	O00305	520 aa	Predicted RBP	10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	CDC7	O00311	574 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	BTN3A1	O00481	513 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	TOR1B	O14657	336 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	FPGT	O14772	594 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	CHUK	O15111	745 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	RAD51B	O15315	384 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	SLC31A1	O15431	190 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	NUAK1	O60285	661 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	LILRB5	O75023	590 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	SMIM24	O75264	130 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	GPC4	O75487	556 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	VIM	P08670	466 aa	Known RBP	10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	TPBGL	P0DKB5	382 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	MPC1L	P0DKB6	136 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	FGF3	P11487	239 aa	Predicted RBP	10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	ZNF8	P17098	575 aa	Predicted RBP	10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	AKT2	P31751	481 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	MAPK9	P45984	424 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	CXCL12	P48061	93 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	CCR3	P51677	355 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	SEC24C	P53992	1094 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	DNAJB13	P59910	316 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	NFKB2	Q00653	900 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	MTAP	Q13126	283 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	BOP1	Q14137	746 aa	Known RBP	10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	OR4D1	Q15615	310 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	CHI3L2	Q15782	390 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	SYTL3	Q4VX76	610 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	KIAA0895L	Q68EN5	471 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	TRAPPC5	Q8IUR0	188 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	SLC22A9	Q8IVM8	553 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	LRRC34	Q8IZ02	419 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	PPP1R14C	Q8TAE6	165 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	EDA	Q92838	391 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	FOXJ1	Q92949	421 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	GLMN	Q92990	594 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	FUBP1	Q96AE4	644 aa	Known RBP	10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	TOE1	Q96GM8	510 aa	Known RBP	10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	ATOH8	Q96SQ7	321 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	APOO	Q9BUR5	198 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	UNK	Q9C0B0	810 aa	Known RBP	10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	NSRP1	Q9H0G5	558 aa	Known RBP	10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	RNF112	Q9ULX5	631 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	DMTF1	Q9Y222	760 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	HS3ST3A1	Q9Y663	406 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	KMT2E	Q8IZD2	1858 aa		10.84	□□□□□ -0.67
PKP4-215	ENST00000494945	IGHV1OR15-9	A0A0B4J2B8	117 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	NPEPPSL1	A6NEC2	478 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	TMEM114	B3SHH9	223 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	PRAMEF26	H0Y7S4	382 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	LIN7A	O14910	233 aa	Predicted RBP	10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	KMO	O15229	486 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	DLX3	O60479	287 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	SLCO2B1	O94956	709 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	FAM107A	O95990	144 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	SERPINE1	P05121	402 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	IGHV4-34	P06331	123 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	C8G	P07360	202 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	DCN	P07585	359 aa	Known RBP	10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	KIAA1024L	P59773	190 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	YPEL5	P62699	121 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	PLOD1	Q02809	727 aa	Predicted RBP	10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	HSPA14	Q0VDF9	509 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	BST1	Q10588	318 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	STX3	Q13277	289 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	TSN	Q15631	228 aa	Known RBP	10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	TMEM31	Q5JXX7	168 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	SBSN	Q6UWP8	590 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	CYHR1	Q6ZMK1	362 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	PIWIL4	Q7Z3Z4	852 aa	Known RBP	10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	LRRTM4	Q86VH4	590 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	ZNF547	Q8IVP9	402 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	SPNS2	Q8IVW8	549 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	OXR1	Q8N573	874 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	BEND7	Q8N7W2	519 aa	Predicted RBP	10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	OR6Y1	Q8NGX8	325 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	HM13	Q8TCT9	377 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	TMEM159	Q96B96	161 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	LGR4	Q9BXB1	951 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	GPR174	Q9BXC1	333 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	TPSD1	Q9BZJ3	242 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	C6orf106	Q9H6K1	298 aa	Predicted RBP	10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	FZD3	Q9NPG1	666 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	NUDT4	Q9NZJ9	180 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	IKZF3	Q9UKT9	509 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	CDYL	Q9Y232	598 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	OR1A2	Q9Y585	309 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	BDP1	A6H8Y1	2624 aa		10.83	□□□□□ -0.68
PKP4-215	ENST00000494945	HEATR5B	Q9P2D3	2071 aa		10.82	□□□□□ -0.68
PKP4-215	ENST00000494945	SLC5A10	A0PJK1	596 aa		10.82	□□□□□ -0.68
PKP4-215	ENST00000494945	MGAT4D	A6NG13	374 aa		10.82	□□□□□ -0.68
PKP4-215	ENST00000494945		A8MT66	165 aa		10.82	□□□□□ -0.68
PKP4-215	ENST00000494945	SLC16A5	O15375	505 aa		10.82	□□□□□ -0.68
PKP4-215	ENST00000494945	GRID2	O43424	1007 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms