RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	RAB4B	P61018	213 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	PITX1	P78337	314 aa	Predicted RBP	11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	CDK16	Q00536	496 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	RUNX3	Q13761	415 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	CAPRIN1	Q14444	709 aa	Known RBP	11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	SMTNL2	Q2TAL5	461 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	TRIM16L	Q309B1	348 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	EML3	Q32P44	896 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	THEM4	Q5T1C6	240 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	IL31	Q6EBC2	164 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	DNAJC24	Q6P3W2	148 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	RGS9BP	Q6ZS82	235 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	PHF13	Q86YI8	300 aa	Predicted RBP	11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	DENND1C	Q8IV53	801 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	KIF2B	Q8N4N8	673 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	EMC1	Q8N766	993 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	TMIE	Q8NEW7	156 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	SETD7	Q8WTS6	366 aa	Known RBP	11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	AKAP1	Q92667	903 aa	Known RBP eCLIP	11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	HDAC2	Q92769	488 aa	Known RBP	11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	ATP2A3	Q93084	1043 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	LRGUK	Q96M69	825 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	FAM83C	Q9BQN1	747 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	CNPY3	Q9BT09	278 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	PINK1	Q9BXM7	581 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	LINC00597	Q9H2U6	94 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	PARVA	Q9NVD7	372 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	RUVBL1	Q9Y265	456 aa	Known RBP	11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	ACOT9	Q9Y305	439 aa		11.47	□□□□□ -0.57
BRCA1-222	ENST00000493919	C2orf74	A8MZ97	194 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	HSBP1L1	C9JCN9	74 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	ZNF701	M0R085	212 aa	Predicted RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919		M0R296	226 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	NDUFS8	O00217	210 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	TRAFD1	O14545	582 aa	Predicted RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	SMAD6	O43541	496 aa	Known RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	NDUFS6	O75380	124 aa	Known RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	OR6B1	O95007	311 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	NFATC1	O95644	943 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	TRUB2	O95900	331 aa	Known RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	PDGFB	P01127	241 aa	Predicted RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	CD72	P21854	359 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	ATP12A	P54707	1039 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	EPHB1	P54762	984 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	RPP30	P78346	268 aa	Known RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	NME3	Q13232	169 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	LTB4R	Q15722	352 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	MLF2	Q15773	248 aa	Predicted RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	ITPRIPL2	Q3MIP1	535 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	PAPD7	Q5XG87	772 aa	Known RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	ACAD10	Q6JQN1	1059 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	SPOCD1	Q6ZMY3	1216 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	TAGAP	Q8N103	731 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	PPP4R1	Q8TF05	950 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	TSPEAR	Q8WU66	669 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	KRT35	Q92764	455 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	NKD2	Q969F2	451 aa	Predicted RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	UTP4	Q969X6	686 aa	Known RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	PLD4	Q96BZ4	506 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	DEPDC7	Q96QD5	511 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	SLC2A13	Q96QE2	648 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	ECSIT	Q9BQ95	431 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	NUDT16L1	Q9BRJ7	211 aa	Known RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	ACPT	Q9BZG2	426 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	BCL2L14	Q9BZR8	327 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	DDX28	Q9NUL7	540 aa	Known RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	DDIT4	Q9NX09	232 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	ACTR3B	Q9P1U1	418 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	WNT16	Q9UBV4	365 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	RSL24D1	Q9UHA3	163 aa	Known RBP	11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	FAM153A	Q9UHL3	310 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	NFU1	Q9UMS0	254 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	PRELID3B	Q9Y3B1	194 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	DGKB	Q9Y6T7	804 aa		11.46	□□□□□ -0.58
BRCA1-222	ENST00000493919	OTOL1	A6NHN0	477 aa	Predicted RBP	11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	TCP11X1	B4DZS4	312 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	IRAK2	O43187	625 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	SEMA3D	O95025	777 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	ABCB4	P21439	1286 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	EIF4A3	P38919	411 aa	Known RBP	11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	NEK3	P51956	506 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	CHN2	P52757	468 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	C1QBP	Q07021	282 aa	Known RBP	11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	PTP4A2	Q12974	167 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	MED21	Q13503	144 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	CLCA4	Q14CN2	919 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	TLR1	Q15399	786 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	TRIP4	Q15650	581 aa	Predicted RBP	11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	KRTCAP3	Q53RY4	240 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	WDR59	Q6PJI9	974 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	NUP54	Q7Z3B4	507 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	MCOLN2	Q8IZK6	566 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	ARL14	Q8N4G2	192 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	ZFP28	Q8NHY6	868 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	RNF34	Q969K3	372 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	PDXP	Q96GD0	296 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	MCEE	Q96PE7	176 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	MRO	Q9BYG7	248 aa		11.45	□□□□□ -0.58
BRCA1-222	ENST00000493919	FRMD8	Q9BZ67	464 aa	Predicted RBP	11.45	□□□□□ -0.58

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