RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 CRLS1Q9UJA2 301 aa22.53■■□□□ 1.2
COL9A3-213ENST00000489045 MGAT4DA6NG13 374 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 AGAP14A8MT82 685 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 CCL22O00626 93 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 TOX3O15405 576 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-213ENST00000489045 LDB2O43679 373 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 KIF1CO43896 1103 aaKnown RBP22.52■■□□□ 1.2
COL9A3-213ENST00000489045 METTL18O95568 372 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 HADHAP40939 763 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 GDF10P55107 478 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 FOXM1Q08050 763 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 IRGCQ6NXR0 463 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 FAM92BQ6ZTR7 304 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 TIPARPQ7Z3E1 657 aaKnown RBP22.52■■□□□ 1.2
COL9A3-213ENST00000489045 PRSS42Q7Z5A4 293 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 NLGN4XQ8N0W4 816 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 NLGN4YQ8NFZ3 816 aaPredicted RBP22.52■■□□□ 1.2
COL9A3-213ENST00000489045 SLC35B2Q8TB61 432 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 ARHGAP9Q9BRR9 750 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 TMEM121Q9BTD3 319 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 SLC12A9Q9BXP2 914 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 WWP1Q9H0M0 922 aa22.52■■□□□ 1.2
COL9A3-213ENST00000489045 IMP3Q9NV31 184 aaKnown RBP22.52■■□□□ 1.2
COL9A3-213ENST00000489045 CFAP20Q9Y6A4 193 aaKnown RBP22.52■■□□□ 1.2
COL9A3-213ENST00000489045 SGTAO43765 313 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 STK17BO94768 372 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 MTHFD1P11586 935 aaKnown RBP22.51■■□□□ 1.19
COL9A3-213ENST00000489045 ITGALP20701 1170 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 SH3BP2P78314 561 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 BCL7AQ4VC05 210 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 CACHD1Q5VU97 1274 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 NXPE1Q8N323 547 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 OR2L2Q8NH16 312 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 ULK4Q96C45 1275 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 DCUN1D1Q96GG9 259 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 ZDHHC12Q96GR4 267 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 C19orf43Q9BQ61 176 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 RAB33BQ9H082 229 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 FAM96AQ9H5X1 160 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 LRRC40Q9H9A6 602 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 EPHA6Q9UF33 1036 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 TMEM184BQ9Y519 407 aaPredicted RBP22.51■■□□□ 1.19
COL9A3-213ENST00000489045 PIKFYVEQ9Y2I7 2098 aa22.51■■□□□ 1.19
COL9A3-213ENST00000489045 DLGAP3O95886 979 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 RALBP11234 206 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 PLA2G2AP14555 144 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 MAP4P27816 1152 aaKnown RBP22.5■■□□□ 1.19
COL9A3-213ENST00000489045 MC4RP32245 332 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 PPP1CAP62136 330 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 PLCL1Q15111 1095 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 TBR1Q16650 682 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 P3H1Q32P28 736 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 DUS1LQ6P1R4 473 aaKnown RBP22.5■■□□□ 1.19
COL9A3-213ENST00000489045 XKR5Q6UX68 686 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 MICALCLQ6ZW33 695 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 SNX20Q7Z614 316 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 TAB3Q8N5C8 712 aaPredicted RBP22.5■■□□□ 1.19
COL9A3-213ENST00000489045 DNAJC1Q96KC8 554 aaKnown RBP22.5■■□□□ 1.19
COL9A3-213ENST00000489045 C12orf66Q96MD2 445 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 INSM2Q96T92 566 aaPredicted RBP22.5■■□□□ 1.19
COL9A3-213ENST00000489045 ACSL5Q9ULC5 683 aa22.5■■□□□ 1.19
COL9A3-213ENST00000489045 LOC101059948A0A1B0GTJ6 334 aa22.49■■□□□ 1.19
COL9A3-213ENST00000489045 KLHL33A6NCF5 533 aa22.49■■□□□ 1.19
COL9A3-213ENST00000489045 GOLGA6L6A8MZA4 724 aa22.49■■□□□ 1.19
COL9A3-213ENST00000489045 TPH1P17752 444 aa22.49■■□□□ 1.19
COL9A3-213ENST00000489045 RNF10Q8N5U6 811 aaKnown RBP22.49■■□□□ 1.19
COL9A3-213ENST00000489045 ATG4AQ8WYN0 398 aa22.49■■□□□ 1.19
COL9A3-213ENST00000489045 RNF31Q96EP0 1072 aa22.49■■□□□ 1.19
COL9A3-213ENST00000489045 LINC00615Q96LM1 132 aaPredicted RBP22.49■■□□□ 1.19
COL9A3-213ENST00000489045 OR6C1Q96RD1 312 aa22.49■■□□□ 1.19
COL9A3-213ENST00000489045 COPS8Q99627 209 aa22.49■■□□□ 1.19
COL9A3-213ENST00000489045 GPN2Q9H9Y4 310 aaPredicted RBP22.49■■□□□ 1.19
COL9A3-213ENST00000489045 TLN1Q9Y490 2541 aaKnown RBP22.49■■□□□ 1.19
COL9A3-213ENST00000489045 SLC35G4P0C7Q5 338 aa22.48■■□□□ 1.19
COL9A3-213ENST00000489045 FAM87AP0C7U9 286 aa22.48■■□□□ 1.19
COL9A3-213ENST00000489045 PRLHRP49683 370 aa22.48■■□□□ 1.19
COL9A3-213ENST00000489045 SEPT6Q14141 434 aa22.48■■□□□ 1.19
COL9A3-213ENST00000489045 KLHL35Q6PF15 583 aa22.48■■□□□ 1.19
COL9A3-213ENST00000489045 UNC5BQ8IZJ1 945 aa22.48■■□□□ 1.19
COL9A3-213ENST00000489045 LILRA3Q8N6C8 439 aaPredicted RBP22.48■■□□□ 1.19
COL9A3-213ENST00000489045 SPDYE1Q8NFV5 336 aaPredicted RBP22.48■■□□□ 1.19
COL9A3-213ENST00000489045 KLHL6Q8WZ60 621 aa22.48■■□□□ 1.19
COL9A3-213ENST00000489045 KIAA1143Q96AT1 154 aaPredicted RBP22.48■■□□□ 1.19
COL9A3-213ENST00000489045 RMDN2Q96LZ7 410 aa22.48■■□□□ 1.19
COL9A3-213ENST00000489045 ULBP3Q9BZM4 244 aa22.48■■□□□ 1.19
COL9A3-213ENST00000489045 TRIT1Q9H3H1 467 aaKnown RBP22.48■■□□□ 1.19
COL9A3-213ENST00000489045 NLE1Q9NVX2 485 aaPredicted RBP22.48■■□□□ 1.19
COL9A3-213ENST00000489045 PIH1D1Q9NWS0 290 aaKnown RBP22.48■■□□□ 1.19
COL9A3-213ENST00000489045 GUCA1BQ9UMX6 200 aa22.48■■□□□ 1.19
COL9A3-213ENST00000489045 BOD1L1Q8NFC6 3051 aa22.47■■□□□ 1.19
COL9A3-213ENST00000489045 CFAP99D6REC4 459 aa22.47■■□□□ 1.19
COL9A3-213ENST00000489045 AP2A1O95782 977 aa22.47■■□□□ 1.19
COL9A3-213ENST00000489045 POLBP06746 335 aa22.47■■□□□ 1.19
COL9A3-213ENST00000489045 ATP1B2P14415 290 aaPredicted RBP22.47■■□□□ 1.19
COL9A3-213ENST00000489045 ZNF28P17035 718 aa22.47■■□□□ 1.19
COL9A3-213ENST00000489045 CDKN1CP49918 316 aaPredicted RBP22.47■■□□□ 1.19
COL9A3-213ENST00000489045 ABHD18Q0P651 414 aa22.47■■□□□ 1.19
COL9A3-213ENST00000489045 POU6F1Q14863 301 aa22.47■■□□□ 1.19
COL9A3-213ENST00000489045 GPR33Q49SQ1 333 aa22.47■■□□□ 1.19
COL9A3-213ENST00000489045 ZRANB3Q5FWF4 1079 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms